Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 374 / 1e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 375 / 2e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 365 / 2e-118 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 341 / 3e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G15980 338 / 2e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 325 / 5e-103 ATPMEPCRA methylesterase PCR A (.1) AT3G60730 322 / 1e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 318 / 1e-100 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 308 / 5e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 306 / 8e-96 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015211 [exp] 1094 / 0 AT3G05610 420 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 607 / 0 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 349 / 3e-112 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 331 / 2e-105 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 323 / 2e-104 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 328 / 4e-104 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 327 / 6e-103 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 322 / 2e-102 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 318 / 9e-101 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013400 [exp] 469 / 1e-158 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 462 / 6e-156 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 384 / 1e-125 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 334 / 3e-107 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 335 / 1e-106 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 329 / 3e-104 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 319 / 2e-101 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 318 / 6e-101 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 318 / 1e-100 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.015G127700 [exp] 313 / 6e-99 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031469 pacid=23155809 polypeptide=Lus10031469 locus=Lus10031469.g ID=Lus10031469.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGGAGGAAAGAAGCGGTTTGTAATCATCGGAGTCTCGTCGTTCCTCCTGGTGGCGATGGTCATCGCCGTCACGGTCGGCGTCGGAAACC AGGGCGAGGGCGGCGAAGTCGGATCCGGCCACCCGGAGAACATCGCCGCCTCGAAGAAGGCCATCACGGCTATCTGCCAGCCGGCGGACTTCCGGAAGGC GTGCGAGCAGAGCCTGGAGAAGTCGACGGCCGGAAAGGTGACCGACCCGAAAGAGCTCGTCAAGGTCGCGTTCACGCTCGCCCAGAAGAGCATTAACGAG TCGTTGGGGAAGTCCGACACGTGGAAAGAACTCGACAGCGACGACAAGACCCACGAGGCTCTGATCACTTGTAAAGAGCTCATGAACATGTCGGTGACCG AGCTCGAGGATTGCCTCGTCAAGGTGTCGGAGGACTTTGAATTCACCAAACTGGACTCATTCATGGCGGATCTTACCACCTGGCTCAGTGCGGCAATGAC GTATCAGGAGACTTGTTTGGACGGGTTCGTGAACGTGAGCACGACGGCCGGTACGAAAATGAGAGAGTTAATGAACCATTCGATGGAGCTCACAACCAAC GGCCTAGATATCGTCACCGGATTGAACTCCATGTTCAGTTCGTTGCAGCCGGATCTATCAGGCGCCGGCCGCCGGCTACTTCAATACGAGGGGAGGGCTA GTTCGCTCCCTGTTCTTGGACACGGTAGGAACGCTTTCCCTTCTTGGGTCCCCGAACGGTTCCGAAGGCTTCTCGAGGATTCTGACGACTCGTCGGAGAA GAAAGATAAGCATAAGGAGGATTCCGACGACGAGACTGAAAAAGAGAAGGACAAAGGCAAGGATGAAGATAAGAAGAAGGACGATGATGGCCACAAAGAG GATTCCGACGACCAAACAGAGGAGGAAGAGAAGAAAGACAACAAGGCCAAGGACAAGAAGGACTTTTCCAAGTCTCCGTCGGAGATCGCCGACATTGTGG TGGCTGAAGACGGCAGCGGAGACTATAAAACGATCAACGACGCGTTGGATCATTTGTTGGAGAAGAAGAAGAAGAAGAAGACCGGCGAGGTGGTCGTGAT GTACATTAAGGCAGGAACCTACAAGGAGCAAGTCGAGGTGAAGAAGAAGTTGGACAATTTGGTCATGATCGGAGACGGAGCCGACAAGACTTTGATCACC GGGAGTAAGAACTTCATCGACGGCGTTAGCACTTATCACACCTGTACCGTCGCCGTTGCCGCCGACTACTTCTTCGCCAAGAACCTCCGGATCGAGAACA GCGCCGGAGCGGAGAAGCATCAGGCGGTGGCGCTCCGAGTCTCGGCCGATTTTGCCGTCTTCTACAACTGCACATTCGACGGGTACCAAGACACTCTGTA CACCCACGCCAAGCGCCAATTCTACCGCTCCTGCACAGTCTCCGGCACAATCGACTACGTCTTTGGCGACGCCGCTGTCGTGTTCCAGAACTGCGTCTTC CTGATCCGGAAGCCGATGGAGAACCAGCAATGCATCGTCACCGCTCAGGGCCGGAAGCAGCGCCACCAGCCGTCGGCGATCATAATTCAAAACGGCACGA TCACCGCCCACCCGGACATGAAGGACGATTGGAAGAACTTGAAGTCGTACCTAGGCCGGCCATGGAAGAACTTTTCGAGGACAATAATAATGGAGTCGTT CATCGACGACCTGATCGATCCGGAAGGGTGGCTACCGTGGATGGGCACCGTCGGGACGAAGACCTGCTGGTACGGCGAGTACGGGAACTACGGTCCCGGC GCCGACAAGAGCCACAGGGTGACGTGGCAAGGGATCAAGAAAATTACGCCTACGCACGCGGTGGACTTCACTCCCCAACGGTTCATCCGGTCCGACCCGT GGGTTAAACCGACCGGGATACCTTACGTTTCGTATATGGTTAAACCGGACACTTCACGGCGGGTCAAGTCGAGTTAA
AA sequence Show only first row Show all	>Lus10031469 pacid=23155809 polypeptide=Lus10031469 locus=Lus10031469.g ID=Lus10031469.BGIv1.0 annot-version=v1.0 MADDGGKKRFVIIGVSSFLLVAMVIAVTVGVGNQGEGGEVGSGHPENIAASKKAITAICQPADFRKACEQSLEKSTAGKVTDPKELVKVAFTLAQKSINE SLGKSDTWKELDSDDKTHEALITCKELMNMSVTELEDCLVKVSEDFEFTKLDSFMADLTTWLSAAMTYQETCLDGFVNVSTTAGTKMRELMNHSMELTTN GLDIVTGLNSMFSSLQPDLSGAGRRLLQYEGRASSLPVLGHGRNAFPSWVPERFRRLLEDSDDSSEKKDKHKEDSDDETEKEKDKGKDEDKKKDDDGHKE DSDDQTEEEEKKDNKAKDKKDFSKSPSEIADIVVAEDGSGDYKTINDALDHLLEKKKKKKTGEVVVMYIKAGTYKEQVEVKKKLDNLVMIGDGADKTLIT GSKNFIDGVSTYHTCTVAVAADYFFAKNLRIENSAGAEKHQAVALRVSADFAVFYNCTFDGYQDTLYTHAKRQFYRSCTVSGTIDYVFGDAAVVFQNCVF LIRKPMENQQCIVTAQGRKQRHQPSAIIIQNGTITAHPDMKDDWKNLKSYLGRPWKNFSRTIIMESFIDDLIDPEGWLPWMGTVGTKTCWYGEYGNYGPG ADKSHRVTWQGIKKITPTHAVDFTPQRFIRSDPWVKPTGIPYVSYMVKPDTSRRVKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10031469 [exp]	0	1
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10026279 [exp]	2.8	0.9476
AT2G43610			Chitinase family protein (.1)		Lus10003584 [exp]	12.2	0.7604
					Lus10034328 [exp]	13.1	0.9348
					Lus10009393 [exp]	16.4	0.9330
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10032087 [exp]	17.7	0.7551
					Lus10009207 [exp]	19.1	0.9279
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	21.3	0.8885
					Lus10011425 [exp]	21.3	0.9279
					Lus10011832 [exp]	23.4	0.9279
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	25.2	0.9279

Compare expression of checked genes

Lus10031469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.