Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02330 530 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 505 / 3e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 476 / 5e-163 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 391 / 3e-129 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 388 / 6e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 368 / 3e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 356 / 5e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 351 / 2e-114 ATPMEPCRA methylesterase PCR A (.1) AT3G05620 349 / 8e-114 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 343 / 1e-110 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015210 [exp] 950 / 0 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029867 [exp] 462 / 6e-159 AT4G02330 352 / 3e-116 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 458 / 6e-150 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 441 / 6e-149 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 391 / 2e-129 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10010309 [exp] 382 / 5e-127 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 371 / 3e-122 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 360 / 4e-118 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 356 / 1e-116 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022800 [exp] 562 / 0 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 536 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 520 / 2e-180 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011100 [exp] 457 / 2e-155 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 400 / 3e-133 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 392 / 2e-130 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134600 [exp] 367 / 6e-121 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 362 / 5e-119 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 360 / 1e-118 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 359 / 4e-118 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031470 pacid=23156025 polypeptide=Lus10031470 locus=Lus10031470.g ID=Lus10031470.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCTCCTACTCCCAAGCTTCTTCCAATCTTCTTCATTCTCTTATCCATTTCTCCTGCATTACCTCTACCAGCACCAGACAACTTCTGCAACA CAACTCCATTCCCGTCATTCTGCAGATCCACTCTGCCATACACCGAAAACAGCTCGATCCACGACTACACCCGAAAATCGGTCCACCAATCTCTATCGCA AGCCCGACAGTTCCGCCGATTAATCAACTACCTTCTCAAGCAAGCTTCGAAATTGAAAACCTTCCGAACCCTCGTCCCGCCTCTTCAGGATTGCCAGTTC CTCGCTCAGTCGAACTTCGACTCACTCTCCAACACAATGTCTGCAATCAGATCAAAAGACAAGCTCCAAACTTTCCAGGCCAGTGACTTGCAGACACTTT TGAGTGCCACGTTGACGAATCTCGACACGTGTCTCGATGGTATTCGTTCAGCCGACTCCGATGTCATTAACTCCCTCGTGGCACCTTTGCTGAAAAATGG GACCAAGTATTGTAGTGTGTCCTTGGCACTCTTTGCCAAAGGTTGGATCCCTCCTCCGAAGAGGAGGAGCCCAAAGGCAGAGTTCTCGCACGAATTCGCG ACTTTGGACCTGTCCGATGGATTGCCATTGGCGATGTCGGGTCACGATCGGAGTTTTTTCGAGTCGTTTAGCAGGATGAAGGTTAAGGAGACTTCGGGTC GTGGCGGAGGGGGAGGAGTGTTGGTGAGCAAGATGGTGGTTGTTAGCAAGAAGGAAGGAGTTGGAAACTTTACTACCATCAATGAAGCTATCGAATCGGC TCCGAATTCGACGGCTGGACATGGCTACTTTGTTATATATGTAACTGAAGGTTACTATGAAGAGTACATTTCCATCCATAAGAAGAAGCACAACTTGATG ATAATCGGAGATGGAATCGGTAAGACTACCATCTCAGGTAACCGGAGTGTCATCGATGGTTGGACCACTTTCAACTCCTCCACATTCGCCGTGGTGGCTC AAGGATTTGTGGCGGTCGGGATAACGTTCAAGAACACGGCCGGACCGGAGAAGAGGCAAGCGGTCGCTGTCAGGAATGGCGCCGACATGTCGGCGTTCTT CAACTGTAGCTTCCAGGGGTACCAGGACACGCTCTACGTCCACTCGTTCCGGCAATTCTACCGCGACTGCGAGGTCTACGGCACAGTCGACTTCATCTTC GGAAACGCCGCCGCTGTGTTCCAAAACTGCCGGATCATGAGCCGGCTCCCGATGGCCCACCAGTTCAACGCGATCACGGCTCAGAGCCGGACCGATCCGA ATCAGAACACGGGGATATCGATCCAAAACTGTAGTATCAAGGCCGCGAAGGATCTTGCGGAGAGCAACGGAACGACTAGGTCTTACCTCGGCCGGCCGTG GAAGGCGTATTCGAGGACGGTGGTGATGAATTCGTACATCGCCAGCTTTCTCGACCCCGCGGGGTGGTCCCCGTGGTTCGGGAACGATTCGCTGAGCACG CTTTACTATGCCGAGTTCAACAACTCCGGAATCGGGGCTAGGACGGGCGGGAGAGTCGATTGGCCCGGGTTCAGGCTGATTAACGAGACAGAGGCCGGGA ATTTCACGGTGGCGAATTTTAACCAGGGAGATGTTTGGTTGCCAGCGACCGGCGTACCTTTTGTTACCGGTTTGGTACAGTAA
AA sequence Show only first row Show all	>Lus10031470 pacid=23156025 polypeptide=Lus10031470 locus=Lus10031470.g ID=Lus10031470.BGIv1.0 annot-version=v1.0 MAVSPTPKLLPIFFILLSISPALPLPAPDNFCNTTPFPSFCRSTLPYTENSSIHDYTRKSVHQSLSQARQFRRLINYLLKQASKLKTFRTLVPPLQDCQF LAQSNFDSLSNTMSAIRSKDKLQTFQASDLQTLLSATLTNLDTCLDGIRSADSDVINSLVAPLLKNGTKYCSVSLALFAKGWIPPPKRRSPKAEFSHEFA TLDLSDGLPLAMSGHDRSFFESFSRMKVKETSGRGGGGGVLVSKMVVVSKKEGVGNFTTINEAIESAPNSTAGHGYFVIYVTEGYYEEYISIHKKKHNLM IIGDGIGKTTISGNRSVIDGWTTFNSSTFAVVAQGFVAVGITFKNTAGPEKRQAVAVRNGADMSAFFNCSFQGYQDTLYVHSFRQFYRDCEVYGTVDFIF GNAAAVFQNCRIMSRLPMAHQFNAITAQSRTDPNQNTGISIQNCSIKAAKDLAESNGTTRSYLGRPWKAYSRTVVMNSYIASFLDPAGWSPWFGNDSLST LYYAEFNNSGIGARTGGRVDWPGFRLINETEAGNFTVANFNQGDVWLPATGVPFVTGLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	0	1
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10013693 [exp]	1.0	0.9772
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	2.0	0.9771
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	2.4	0.9715
AT3G11590			unknown protein		Lus10013311 [exp]	5.7	0.9558
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	6.5	0.9606
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	7.2	0.9540
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	8.2	0.9668
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	8.5	0.9540
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	8.8	0.9559
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	9.9	0.9542

Compare expression of checked genes

Lus10031470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.