Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 152 / 1e-45 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56250 138 / 4e-40 ATPP2-B14 phloem protein 2-B14 (.1) AT1G56240 135 / 5e-39 ATPP2-B13 phloem protein 2-B13 (.1) AT2G02360 124 / 1e-34 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02230 119 / 3e-32 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02240 111 / 2e-29 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02340 107 / 3e-28 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02250 106 / 1e-27 ATPP2-B2 phloem protein 2-B2 (.1) AT1G80110 104 / 3e-27 ATPP2-B11 phloem protein 2-B11 (.1) AT5G24560 102 / 2e-26 ATPP2-B12 phloem protein 2-B12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031473 [exp] 295 / 3e-102 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10031484 [exp] 298 / 1e-101 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10015208 [exp] 288 / 6e-99 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10015209 [exp] 283 / 3e-97 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10020674 [exp] 223 / 5e-73 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 219 / 2e-71 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 218 / 5e-71 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10018171 [exp] 123 / 7e-34 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 117 / 2e-31 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 192 / 2e-61 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 175 / 2e-54 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G266900 [exp] 125 / 6e-35 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 124 / 1e-34 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G015800 [exp] 119 / 1e-32 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 119 / 1e-32 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 117 / 3e-32 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 114 / 3e-31 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 94 / 3e-24 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 74 / 1e-15 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031472 pacid=23155884 polypeptide=Lus10031472 locus=Lus10031472.g ID=Lus10031472.BGIv1.0 annot-version=v1.0 ATGTCGCCGGTCAACGTCAACTCTCTACCGGAAGACTGCCTCTCTGCAATCCTCTGTTTCACATCCCCACATGACGCCTCCCGCTCCTCCGCCGTATCCG CCGCTTTCAACTCCGCCGCCGACTCCGACGCCGTCTGGAACAGAGGCGGGAACGGTCGCCCCCCCTCCGACTCCCCCCGCATTGTTGCCGAATCGATCCC GCCCCTCGAGTTCTCATCCAAGAAGGAGCTTTTCCACCTCCTCTGCGACTCTGTTCTCGTCGATGGCGGACTGAAAATGTTGAAGCTGGAGAAATCAACC GGGAAGAAAAGCTACGTACTTTCCGCGAGGGATCTCTCAATAACATGGAGTAACGAACCATTGTACTGGTCTTGGACTTCCGATTCGGAATCGATGTTTC CGGAAGTGGCGTTGCTAAGGACAATGTCGTGGCTGGAGATCGACGGTCGGATCAACACTGGAATGCTGACAGCGAATACTAAGTACGGAGCGTATCTGTT GATTAAAATAACGGATAGATCGTACGGTCTGGATTCGATGGCGTCGGAGGTGACAGGGGGGCGGAGGGTCCGGTTCTGTGGGGTGGTAGTGAAGCCTGTA GTAGTGGAACGGCTTACCTGA
AA sequence Show only first row Show all	>Lus10031472 pacid=23155884 polypeptide=Lus10031472 locus=Lus10031472.g ID=Lus10031472.BGIv1.0 annot-version=v1.0 MSPVNVNSLPEDCLSAILCFTSPHDASRSSAVSAAFNSAADSDAVWNRGGNGRPPSDSPRIVAESIPPLEFSSKKELFHLLCDSVLVDGGLKMLKLEKST GKKSYVLSARDLSITWSNEPLYWSWTSDSESMFPEVALLRTMSWLEIDGRINTGMLTANTKYGAYLLIKITDRSYGLDSMASEVTGGRRVRFCGVVVKPV VVERLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	0	1
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	1.4	0.9720
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	2.0	0.9697
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	2.4	0.9312
AT4G36500			unknown protein		Lus10014291 [exp]	5.9	0.9103
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	5.9	0.8934
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	7.7	0.8427
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	9.4	0.8931
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	10.9	0.8684
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	11.0	0.8730
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	12.4	0.8571

Compare expression of checked genes

Lus10031472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.