Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 203 / 7e-65 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56250 184 / 2e-57 ATPP2-B14 phloem protein 2-B14 (.1) AT1G56240 180 / 5e-56 ATPP2-B13 phloem protein 2-B13 (.1) AT2G02360 159 / 1e-47 ATPP2-B10 phloem protein 2-B10 (.1) AT5G24560 138 / 7e-40 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 137 / 7e-39 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02230 137 / 8e-39 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02250 136 / 1e-38 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 132 / 4e-37 ATPP2-B8 phloem protein 2-B8 (.1) AT1G80110 127 / 7e-36 ATPP2-B11 phloem protein 2-B11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031484 [exp] 412 / 3e-146 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10015208 [exp] 398 / 1e-141 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10015209 [exp] 374 / 3e-132 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10020674 [exp] 305 / 5e-105 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 302 / 1e-103 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10031472 [exp] 299 / 1e-103 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10020673 [exp] 293 / 4e-100 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10018171 [exp] 154 / 6e-45 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10029674 [exp] 146 / 2e-42 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 257 / 5e-86 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 239 / 7e-79 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 153 / 3e-45 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G015800 [exp] 152 / 6e-45 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 147 / 6e-43 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 146 / 2e-42 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 145 / 2e-42 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 137 / 2e-39 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 117 / 9e-33 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 84 / 4e-19 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031473 pacid=23155947 polypeptide=Lus10031473 locus=Lus10031473.g ID=Lus10031473.BGIv1.0 annot-version=v1.0 ATGTCGACGGTCAACGTCAACTCCCTCCCGGAAGACTGCCTCTCTGCAATCCTCTGTTTCACATCCCCACAGGACGCCTCCCGCTCCTCCGCCGTATCCG CCGCTTTCAACTCCGCCGCCGACTCCGACGCCGTCTGGAACAGCTTCCTACCCTCCGACTACCCCCGCATTGTTGCCGAATCGATCCCGCCCCTCGAGTT CTCATCCAAGAAGGAGCTTTTCCACCTCCTCTGCGACTCTGTTCTCATCGATGGCGGACTGAAAATGTTCAAGCTGGAGAAATCAACAGGGAAGAAAAGC TACGTACTTTCCGCGAGGGATCTCTCAATAACATGGAGTAACGAACCATTGTACTGGTCGTGGACTTCCGATTCGGAATCGATGTTTCCGGAAGTGGCTT TGCTAAGGACAATGTCGTGGCTGGAGATCGACGGTCGGATCAACACTGGAATGCTGACAGCGAATACTAAGTACGGAGCGTATCTGTTGATTAAAATAAC GGATAGATCGTACGGTCTGGATTCGATGGCGTCGGAGGTGACAGTTCGAGTGGGTGGTAATGAAGTGTGTAGTAGTGGAACGGCTTACTTGAGGGGCAAG AGAAACGAGACGGTTTCGATGATGGAGCGGCTGATGTACGGACACCGTGTGAGTGAAGTGAAAGGTTACCATTTGAAAGGGGGGCTTGTTGTTCAAGGCA TTGAAGTTAGGCCTAAACCCTAA
AA sequence Show only first row Show all	>Lus10031473 pacid=23155947 polypeptide=Lus10031473 locus=Lus10031473.g ID=Lus10031473.BGIv1.0 annot-version=v1.0 MSTVNVNSLPEDCLSAILCFTSPQDASRSSAVSAAFNSAADSDAVWNSFLPSDYPRIVAESIPPLEFSSKKELFHLLCDSVLIDGGLKMFKLEKSTGKKS YVLSARDLSITWSNEPLYWSWTSDSESMFPEVALLRTMSWLEIDGRINTGMLTANTKYGAYLLIKITDRSYGLDSMASEVTVRVGGNEVCSSGTAYLRGK RNETVSMMERLMYGHRVSEVKGYHLKGGLVVQGIEVRPKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	0	1
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	1.0	0.9838
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	2.0	0.9697
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	4.0	0.9468
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	4.6	0.9304
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	4.6	0.8850
AT4G36500			unknown protein		Lus10014291 [exp]	5.7	0.9219
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	6.3	0.8850
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	6.5	0.9484
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	9.5	0.9136
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	10.7	0.8877

Compare expression of checked genes

Lus10031473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.