Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05625 334 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015207 [exp] 504 / 0 AT3G05625 344 / 2e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001552 [exp] 252 / 1e-85 AT3G05625 203 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031484 [exp] 115 / 4e-30 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012400 [exp] 375 / 2e-132 AT3G05625 357 / 3e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031474 pacid=23156006 polypeptide=Lus10031474 locus=Lus10031474.g ID=Lus10031474.BGIv1.0 annot-version=v1.0 ATGGTGGCGACCCAGATCACCAAATTCCCATTACCCTGCCATTACACAACTTCATCTGCTTCGTTTCCACAAACCCTAATCAGATCTCGCGAATCCCTCC AATTTGTTCCTCACGGACTTCCCAAATTGACCAGGAGACTGTTCCTTCCCTCCGTTTCCGGCATCTGGGACGCAATCACCGGCGGCGGCGGCGGCGGAGA AAAATCCCGAGAAGCTTCTCTCGCCGTCCGGCGAGGAATGCTGCTATTCCGACAAGGAGATGTGTTGGATTCTGTAATGGAGTTCGACAAGGCGATTGAG TTGGATCCTCGTCAAAAGGCATATATGTGGCAAAGGGGTTTATCACTTTACTATCTGGATAGGTTTGAAGAAGGGGCAGAGCAATTCAGGATAGATGTTG CAATGAACCCAAATGACACTGAGGAGTCAATATGGTGCTTTCTCTGTGAAGCTCAGTTGTATGGAGTTGCTGAAGCGAGGAAGCGATATCTCGAGGTTGG TAGAGATCCTAGGCCAGTCATGAGAGAAGCTTACAACATGTTCAGAGATGGTGGGGATCCTGAAAAGCTTGTCGCTGCATTTTCGAAAGGAGGCAGACCC AACGAGTACTTCTACGCTTCGTTATACGCAGGATTATACCACGAATCGCAGAAGGAAGCAGATGCAGCTAAGCTTCATCTAGTTGCAGCTTGCAAGTCTC TTTATGGACAAAGATCTGATGACTATATGGCTTCTCTTGCTAAGGTTCACTGTCAATGTAGAAATTGGAGCATTGATTGA
AA sequence Show only first row Show all	>Lus10031474 pacid=23156006 polypeptide=Lus10031474 locus=Lus10031474.g ID=Lus10031474.BGIv1.0 annot-version=v1.0 MVATQITKFPLPCHYTTSSASFPQTLIRSRESLQFVPHGLPKLTRRLFLPSVSGIWDAITGGGGGGEKSREASLAVRRGMLLFRQGDVLDSVMEFDKAIE LDPRQKAYMWQRGLSLYYLDRFEEGAEQFRIDVAMNPNDTEESIWCFLCEAQLYGVAEARKRYLEVGRDPRPVMREAYNMFRDGGDPEKLVAAFSKGGRP NEYFYASLYAGLYHESQKEADAAKLHLVAACKSLYGQRSDDYMASLAKVHCQCRNWSID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	0	1
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	1.7	0.9362
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	2.4	0.9367
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	3.3	0.9377
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	4.5	0.9034
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	6.0	0.9188
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	6.9	0.9130
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	7.5	0.9288
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	10.2	0.9279
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10031371 [exp]	12.0	0.9094
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	12.4	0.9027

Compare expression of checked genes

Lus10031474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.