Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27930 442 / 2e-155 Protein phosphatase 2C family protein (.1.2) AT3G05640 436 / 3e-153 Protein phosphatase 2C family protein (.1.2) AT3G16800 367 / 4e-126 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 286 / 4e-93 Protein phosphatase 2C family protein (.1) AT1G79630 286 / 8e-93 Protein phosphatase 2C family protein (.1.2.3) AT4G03415 284 / 4e-92 Protein phosphatase 2C family protein (.1.2) AT1G16220 281 / 6e-91 Protein phosphatase 2C family protein (.1) AT3G02750 281 / 8e-91 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 278 / 3e-90 Protein phosphatase 2C family protein (.1) AT5G01700 269 / 2e-87 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015206 [exp] 665 / 0 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10029874 [exp] 507 / 0 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 401 / 4e-139 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 397 / 2e-137 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 296 / 8e-98 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10020671 [exp] 288 / 2e-97 AT3G05640 283 / 8e-96 Protein phosphatase 2C family protein (.1.2) Lus10041277 [exp] 305 / 5e-94 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10021486 [exp] 286 / 2e-93 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10000402 [exp] 287 / 5e-93 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012200 [exp] 464 / 4e-164 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 459 / 3e-162 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 428 / 4e-150 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 427 / 2e-149 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 315 / 5e-104 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 295 / 2e-96 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 295 / 6e-96 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 294 / 9e-96 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 291 / 4e-95 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 290 / 1e-94 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10031475 pacid=23155837 polypeptide=Lus10031475 locus=Lus10031475.g ID=Lus10031475.BGIv1.0 annot-version=v1.0 ATGGGGCATCTATCAGCCATGTTGAAGTTGGCAAGGTCACTCTCACTGAAGAAAGACAAGAGCTTTCATGCTGATGGCAAAGAAACTGCCAAAGCAAAGG AGAAAGAGGCAAAGAAGAATGAGTTGGTGTTCAAGTCCTCTGGTTCAAACAACAACTTGGCCTCACTCTTCTCCAAGAGGGGAGAAAAGGGTGTCAATCA GGATTGCTTCATCCTTTGGGAGGAATTTGGATGCCAAGAGGACATGACCTTCTGTGGGATATTTGATGGCCATGGACCATGGGGACACTTTGTGGCCAAG AAAGTTAGGGAGACATTGCCATCATACCTCCTATGTAACTGGCAAGAAACCCTAGCTAACAAACCCTCAGTAGATTTTCCTAACGAAATCAAGAAAGAAA AGCTTCACCGGTTCAATATCTGGAAGCGTTCGTACCTCAAGACCTTTGCAGCTGTGGACCATGAGCTCGAGCAGCAGCAAGACAAGATTGATTCTTTCTA CAGTGGCACAACCGCATTAACCCTAGTCAGACAGGCAAGTAGTAACCGGTATCATCGGGCAAATGTTGGTGACTCTAGGGCTATATTGGCTACAACATCA GAGGATGGTGGCAGCTTGGTTCCTGTTCAACTCACTGTCGATTTCAAGCCAACTCTACCCGAGGAAGCAGAGAGGATCTTAGAATGCAAAGGTAGAGTCT TTAGTTTAGAAGACGAGCCAGGAGTCGAAAGGGTCTGGCTACCGCATGGAGAATCACCCGGCCTAGCAATGTCTCGAGCGCTTGGCGATTACTGCATCAA GGACTTCGGCCTCATCTCTGAACCCGAAGTGACCCTGAGGCAAATCTCCACTAGAGACCGGTTTGTGATCTTGGCAACCGATGGGGTTTGGGACGTGATC TCGAACCAAGAAGCCGTAGAGATCGTGTCGTCGGTGAGTGACCGTTCGAAAGCTGCCGAGTGTCTGGTGAAGGCAGCCGCGAATGGTTGGAGAAAGAGGA GGAAAGGGATTGCCATGGATGACATAAGTGTTGTTTGCTTGTTCTTGCATCCTCATCTCCCAACTATGTGTAAAGAAGTTGTTAGTGTTGCTACAAAGAT GGTTTGA
AA sequence Show only first row Show all	>Lus10031475 pacid=23155837 polypeptide=Lus10031475 locus=Lus10031475.g ID=Lus10031475.BGIv1.0 annot-version=v1.0 MGHLSAMLKLARSLSLKKDKSFHADGKETAKAKEKEAKKNELVFKSSGSNNNLASLFSKRGEKGVNQDCFILWEEFGCQEDMTFCGIFDGHGPWGHFVAK KVRETLPSYLLCNWQETLANKPSVDFPNEIKKEKLHRFNIWKRSYLKTFAAVDHELEQQQDKIDSFYSGTTALTLVRQASSNRYHRANVGDSRAILATTS EDGGSLVPVQLTVDFKPTLPEEAERILECKGRVFSLEDEPGVERVWLPHGESPGLAMSRALGDYCIKDFGLISEPEVTLRQISTRDRFVILATDGVWDVI SNQEAVEIVSSVSDRSKAAECLVKAAANGWRKRRKGIAMDDISVVCLFLHPHLPTMCKEVVSVATKMV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	0	1
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	3.2	0.9371
AT1G13140		CYP86C3	"cytochrome P450, family 86, s...		Lus10032085 [exp]	3.5	0.9255
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	7.4	0.9083
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	9.3	0.9355
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	11.2	0.9172
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	11.3	0.9136
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	12.6	0.8992
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	13.6	0.8929
AT5G38060			unknown protein		Lus10009105 [exp]	16.1	0.8284
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028614 [exp]	17.0	0.8082

Compare expression of checked genes

Lus10031475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.