Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65750 857 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT3G55410 844 / 0 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015205 [exp] 960 / 0 AT5G65750 1889 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029462 [exp] 946 / 0 AT5G65750 1755 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005962 [exp] 941 / 0 AT5G65750 1404 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029463 [exp] 806 / 0 AT5G65750 1641 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005961 [exp] 360 / 4e-121 AT3G55410 498 / 9e-171 2-oxoglutarate dehydrogenase, E1 component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G051600 [exp] 876 / 0 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.010G209000 [exp] 876 / 0 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain
Representative CDS sequence Show only first row Show all	>Lus10031476 pacid=23155888 polypeptide=Lus10031476 locus=Lus10031476.g ID=Lus10031476.BGIv1.0 annot-version=v1.0 ATGACGTGGTTTAGAGCTGGTTCTAGCATAGCAAAGCTTGCCATTAGGAGGAGTTTGTCTCAGGGAGGGCCCAGAACGCGAGTGTTACCTACTGCTACTG TTCAAAGTCGGTATTTTCATACCACTGTAGTTAGGCCAAAGGCACAGTCAGCACCTGTCCCGAGGGCTGTTCCTCTGTCTAAGCTCACTGATAGCTTCTT AGATGGAACAAGCAGTGTCTACTTAGAGGAGCTTCAACGTGCATGGGAAGCGGACCCTAATAGCGTGGATGAGTCATGGGACAACTTCTTCAGGAACTTT GTGGGTCAGGCTGCTACATCTCCTGGCATTTCAGGTCAAACAATTCAGGAGAGTATGCGGTTGTTGCTTTTGGTTAGGGCATACCAGGTGAATGGCCACA TGAAAGCCAAACTCGACCCTTTGGCACTGGAAGAAAGAGAGGTCCCTGATGATCTAAACCCTGCTCTTTATGGCTTCTCGGAAGCGGATCTTGATAGGGA GTTCTTTTTAGGAGTTTGGAAGATGTCTGGTTTTTTATCTGAGAACCGCCCTGTACAGACCCTCAGGAGAGACTGGCTTGCTTCTCATTGGACTGGGTTC AAGTCACCCGAGCAGATTTCACGTATCCGAAATACCGGGGTCAAGCCTGAAATCTTGAAGAATGTTGGTAAAGCAATCACTGCTCTTCCGGAGACTTTTA AGCCTCACAGAGCTGTAAAGAAGGTATACGAGCAACGTGCCCAAATGATAGAAACAGGAGAAGGCATTGACTGGGCTGTTGCAGAAGCCCTTGCTTTTGC TACATTACTTGTTGAGGGCAACCATGTTCGATTGAGCGGTCAGGATGTCGAGAGAGGTACATTTAGTCATCGTCATTCCGTTCTTCATGATCAAGAAACT GGTGACAAGTATTGCCCTCTCGACCACGTGGTTATGAACCAGGATGAGGAGATGTTCACTGTTAGTAACAGCTCTCTTTCTGAATTTGGTGTTCTGGGAT TCGAGTTGGGGTATTCAATGGAAAGCCCGAACTCACTGGTTCTGTGGGAAGCCCAGTTTGGTGATTTTTCCAACGGGGCTCAGGTCATATTTGATCAGTT CTTGAGCAGCGGTGAGTCAAAATGGCTTCGTCAAACTGGCCTTGTTGTGCTTCTTCCCCATGGATACGATGGCCAGGGTCCTGAACACTCGAGTGCTCGG TTAGAGCGCTTTCTACAGATGAGTGATGACAATCCTTATGTGATTCCTGAGATGGATTCGACAATGCGTAAACAAATTCAGGAATGCAATTGGCAGGTTG TCAATGTAACCACACCTGCAAATTACTTCCATGTTTTGAGGAGACAGATTCACAGAGAGTTCCGTAAGCCTCTTATTGTAATGGCTCCGAAAAATCTGCT TCGTCACAAGGAGTGCAAATCGAATCTCTCAGAGTTTGACGATGTCCAAGGCCACCCTGGATTTGACAAGCAGGGTACGAGATTCAAGCGTCTGATAAAA GATCAGAACGAACACTCTGATCTCGAGGCGGGCATCAGACGCCTCGTTCTCTGCTCAGGAAAGGTGTATTATGAGCTTGACGAAGAGCGGAAGAAGAAAG ATGCAAAGGATGTTGCTATCTGCAGGGTGGAACAACTGTGTCCTTTCCCATATAATCTTGTCCAGCGTGAGCTCAAGCGATATCCAAATGCGGAAATTGT GTGGTGCCAGGAGGAGCCGATGAACATGGGAGAATACAACTACGTAGCACCTCGGCTATGCACAGCGATGAAGTCACTAAGCAGAGGAGGGTTCGACGAC ATCAAGTACGTGGGGCGTGCTCCCTCGGCCGCGACAGCCACTGGGTTCTACCAAGTCCACGGCAGGGAACAGTCGGAGCTCGTGCACAAGGCTATCCAGC CCGAACCGATCCAGTCTCCAGCCGAAACTGTTTAA
AA sequence Show only first row Show all	>Lus10031476 pacid=23155888 polypeptide=Lus10031476 locus=Lus10031476.g ID=Lus10031476.BGIv1.0 annot-version=v1.0 MTWFRAGSSIAKLAIRRSLSQGGPRTRVLPTATVQSRYFHTTVVRPKAQSAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF VGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLALEEREVPDDLNPALYGFSEADLDREFFLGVWKMSGFLSENRPVQTLRRDWLASHWTGF KSPEQISRIRNTGVKPEILKNVGKAITALPETFKPHRAVKKVYEQRAQMIETGEGIDWAVAEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQET GDKYCPLDHVVMNQDEEMFTVSNSSLSEFGVLGFELGYSMESPNSLVLWEAQFGDFSNGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSAR LERFLQMSDDNPYVIPEMDSTMRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIK DQNEHSDLEAGIRRLVLCSGKVYYELDEERKKKDAKDVAICRVEQLCPFPYNLVQRELKRYPNAEIVWCQEEPMNMGEYNYVAPRLCTAMKSLSRGGFDD IKYVGRAPSAATATGFYQVHGREQSELVHKAIQPEPIQSPAETV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	0	1
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10033490 [exp]	1.0	0.9281
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10016184 [exp]	2.0	0.9195
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	5.0	0.8987
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	5.1	0.8597
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	6.5	0.8875
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	6.9	0.9113
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	7.7	0.9145
AT3G58050			unknown protein		Lus10017239 [exp]	7.9	0.8804
AT5G49810		MMT	methionine S-methyltransferase...		Lus10026263 [exp]	9.4	0.8416
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	10.4	0.8974

Compare expression of checked genes

Lus10031476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.