Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11420 1080 / 0 ATTIF3A1, ATEIF3A-1, TIF3A1, EIF3A eukaryotic translation initiation factor 3A (.1) AT4G23330 63 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015204 [exp] 1484 / 0 AT4G11420 1284 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10031481 [exp] 1174 / 0 AT4G11420 691 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015201 [exp] 1079 / 0 AT4G11420 935 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015202 [exp] 314 / 1e-100 AT4G11420 313 / 2e-101 eukaryotic translation initiation factor 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021400 [exp] 1154 / 0 AT4G11420 1083 / 0.0 eukaryotic translation initiation factor 3A (.1) Potri.013G011900 [exp] 1137 / 0 AT4G11420 1028 / 0.0 eukaryotic translation initiation factor 3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10031477 pacid=23156023 polypeptide=Lus10031477 locus=Lus10031477.g ID=Lus10031477.BGIv1.0 annot-version=v1.0 ATGATTCCGGAGCTTTTTACTGGTTTCTTCTCGATACCTCATTGGCTCGCCTGCGATTCGTTTTATTCATCGGCCGGTTTTGAAATTTGGTTTGTGTTTG TGCGTCTGTGGCAGGTCGGTAGGGTTCTGATTCCTTCGTTGCAAAACATGTCGAATTTCGCGAGGCCGGAGAACGCGCTGAAGCGAGCCGAAGAGCTGAT AAATGTTGGACAAAAGCAGGAAGCTCTTCAGACGCTTCACAATGTCATTACGTCGAAACGGTACAGGGCATGGCAGAAGACCCTGGAGAAGATTATGTTC AAATATGTGGAGCTCTGCGTCGAGATGAGGAGGGGAAGATTCGCGAAAGACGGGCTGATCCAGTACAGGATTGTTTGCCAGCAAGTGAATGTGGCTTCCT TGGAGGAAGTGATCAAGTATTTTATTCAGCTCTCCACCGAGAAGGCTGAACAAGCTCGTACTCAGGCGCAAGCTCTGGAGGATGCTCTGGATGTTGATGA TCTGGAAGCGGACAAGAGGCCGGAAGATCTGATGCTCAGTTATGTTAGTGGGGAGAAAGGGAAGGAAAGGTCTGACCGTGAGCTTGTTACTCCTTGGTTC AAGTTTCTGTGGGAGACCTACAGAACTGTGCTCGAGATTCTGAGGAACAACTCAAAGTTGGAAGCTCTATATGCGATGACTGCACATCGAGCCTTCCAAT TCTGCAAGCAGTACAAGCGAACCACCGAGTTCAGGAGACTGTGTGAGATCATCAGAAATCATTTGGCAAACCTAAACAAGTACAGAGATCAAAGGGACCG ACCCGATCTGTCTGCTCCTGAAAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTCAAGGTTGCTACTGAGCTTGAGCTCTGGCAGGAAGCTTTT CGGTCTGTGGAGGATATCCATGGATTGATGTGCCTGGTGAAGAAGACCCCCAAATCTTCATTGATGGTGGTATACTATGCCAAGTTGACTGAAGTGTTTT GGATCTCTTCAAGCCATCTTTATCATGCTTATGCATGGTTCAAGCTTTTTAGCCTTCAAAAAAGCTTCAACAAGAACCTCAGCCAGAAAGATTTGCAGCT GATAGCGTCTGCTGTTGTTTTGGCGGCTTTAGCGGTGCCTCCTTATGACATCCGTCGAGCATCTCATGTGGAACTTGAAAATGAAAAGGAGCGTAACATG AGAATGTCAAACCTCATCGGGTTCAACTTGGATCCCAAATCTGAGAGCAGAGAAGTGCTTTCAAGGCCGTCCCTCCTGTCCGAACTGGCGTCCAAAGGTG TGCTCAGTTGTGCAACACAAGAAGTGAAAGACATCTATCATCTTATGGAGCATGAGTTTCTCCCTGTTGATCTCGGGGCAAAGATACAACCTTTACTCGC CAAAATATCGAAAGTCGGTGGAAAGCTTGCCTCAGCTTCTGGTGTGGCAGAGGTTCAACTATCCCAGTACATCCCTGCCCTCGAAAAGCTTGCTACCCTC AGGCTGCTTCGGCAGGTCTCTCAGGTGTATCAGACAATGAAGATTGGAAAGTTATCCCAAATGATTCCGTTCTTCGATTTCTCTGTGGTTGAGAAAATCT CAGTTGATGCAGTCAAGCATAAGTTCATTGCTATGAAAGTTGATTATATGAAGCATGCTGTGATGTTCGGAGATAGAATATTCGAATCGGATGGCTTGCA AGATCATTTGACTACTTTTGCTGAATTTCTGAACAAAGCAAGGGCAATGATCTACCCACCTGCTAAGAGATCATCAAAACTTGGTGATATCTTGCCAGGG CTAGGCGATACTGTTGACAAGGAACACAAAAGACTTCTCGCTAGGAAGTCAATCATAGAGAAGAGAAAAGAAGAACAGGAACGGCAACTTCTTGAAATGG AACGGGAGCAAGAGTCCAAGAGATTGTCTGAGCAGAAGAGAACGGAGGAGCAAGAACAGAAGAGGCTCGCAGCAGAGTATGAGCGCCTGAAGAACCAGAG GATCCTGCGCGAGATAGAGGAGCGTGAACTCGAAGAAGCACAGGCATTCCTCGAGGAAGCTGAGAAGCGCAGTAAAAAGAAAGGCGGAAAGAAGCCTATC ATAGAAGGAGAGAAGGTGACTAAGGAGACTTTGATGGAAAGGGCTAGGAACGAACAGCTGAGGGAAAGGCAAGAAATGGAGAAGAAGCTGCAAAGGTCCG TTAAAACAATGGATCACCTGGAGCGCGCCAAAAGAGAAGAAGCTGCCCCATTGATTGAAGCCGCCTTCCAGCAACGACTCGTCGAAGAGCAGGCCCTCCA TGAACGTGAACAACAGCTTGAGGTTGAACTTAGCAGGCAGCATCATGAAGGAGATCTCAAGGAGAAGAACCGCCTAGCTCGAATGATCGAAAACAAGAGC ATTTTCCAGGAGAGGGTGATCAGCCGTCGGCAAGAGGAGTTCGATCGAAGGAGAATCGAGAAGGAAGCGAGACTCAACCAGATTATGCAAGCTAGGAAGC AAGAAAGGGAGATTCAGAGGAAGAAAGTATTCTATGTTAGGGCTGAGGTGGAGAGGCTGGCTAAGCTTAAGGAAGAGGAGGAAGCTAAAAAGCGAGAAGA GGCGGACAGAAGAAAGAAGGAAGAATTGGAGAGAAAGGCGAAGCTGGACGAGATCGCGGCGAAGCAGAGGCAGAGAGAGCAAGAACTGGAAGAGAAAGAA AGGTTGAGGAGAGAGGCTCTTTTGTCTGGAAGGACAACGTCAACAGATGGACCTTCCAGGCCCTCCCTCGCGGCCCGGGGAGGGGCAGCACCAGCCGCAC CGTCCTCCGGAGCACCGAAATATGTGCCTAAGTTCCGTCGCAGTGGTGACAGTGCTGGACAGGCTCCTCCACCAGACACTGGTCGGAGCAGCAGCGTGGG TGGAGCCAGACCTGGTCCAGAGTCAGCTGATCGCTGGACCAGCGGTGGCGCTGCCAGGGAGCCAGACAGATGGACAAGGGGCGGCGCTAGGCAGCCTCCG CCTCCTACCGGTGGCGGGTCTCCTGCTGCAGACGAGCGCAACCCGCCTGGTGACAGGTGGCGCGGCAGCAGTGGCGGAGCCGGTAGTTGGTCTGCTGCTA GGCGCGAGCGTTGA
AA sequence Show only first row Show all	>Lus10031477 pacid=23156023 polypeptide=Lus10031477 locus=Lus10031477.g ID=Lus10031477.BGIv1.0 annot-version=v1.0 MIPELFTGFFSIPHWLACDSFYSSAGFEIWFVFVRLWQVGRVLIPSLQNMSNFARPENALKRAEELINVGQKQEALQTLHNVITSKRYRAWQKTLEKIMF KYVELCVEMRRGRFAKDGLIQYRIVCQQVNVASLEEVIKYFIQLSTEKAEQARTQAQALEDALDVDDLEADKRPEDLMLSYVSGEKGKERSDRELVTPWF KFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAF RSVEDIHGLMCLVKKTPKSSLMVVYYAKLTEVFWISSSHLYHAYAWFKLFSLQKSFNKNLSQKDLQLIASAVVLAALAVPPYDIRRASHVELENEKERNM RMSNLIGFNLDPKSESREVLSRPSLLSELASKGVLSCATQEVKDIYHLMEHEFLPVDLGAKIQPLLAKISKVGGKLASASGVAEVQLSQYIPALEKLATL RLLRQVSQVYQTMKIGKLSQMIPFFDFSVVEKISVDAVKHKFIAMKVDYMKHAVMFGDRIFESDGLQDHLTTFAEFLNKARAMIYPPAKRSSKLGDILPG LGDTVDKEHKRLLARKSIIEKRKEEQERQLLEMEREQESKRLSEQKRTEEQEQKRLAAEYERLKNQRILREIEERELEEAQAFLEEAEKRSKKKGGKKPI IEGEKVTKETLMERARNEQLRERQEMEKKLQRSVKTMDHLERAKREEAAPLIEAAFQQRLVEEQALHEREQQLEVELSRQHHEGDLKEKNRLARMIENKS IFQERVISRRQEEFDRRRIEKEARLNQIMQARKQEREIQRKKVFYVRAEVERLAKLKEEEEAKKREEADRRKKEELERKAKLDEIAAKQRQREQELEEKE RLRREALLSGRTTSTDGPSRPSLAARGGAAPAAPSSGAPKYVPKFRRSGDSAGQAPPPDTGRSSSVGGARPGPESADRWTSGGAAREPDRWTRGGARQPP PPTGGGSPAADERNPPGDRWRGSSGGAGSWSAARRER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	0	1
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	1.4	0.9534
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	3.2	0.9286
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	4.9	0.9248
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	5.7	0.8816
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	6.0	0.9081
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	8.7	0.9151
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	9.5	0.9143
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	9.8	0.9172
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	9.9	0.9141
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018149 [exp]	12.3	0.8788

Compare expression of checked genes

Lus10031477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.