Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47880 192 / 3e-58 ERF1-1 eukaryotic release factor 1-1 (.1.2) AT1G12920 189 / 4e-57 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 187 / 3e-56 ERF1-3 eukaryotic release factor 1-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042947 [exp] 196 / 1e-59 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 194 / 6e-59 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028312 [exp] 182 / 1e-54 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 182 / 2e-54 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 182 / 2e-54 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 181 / 4e-54 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 179 / 1e-52 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 174 / 2e-51 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072000 [exp] 194 / 3e-59 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1) Potri.003G159000 [exp] 189 / 4e-57 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 188 / 8e-57 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10031479 pacid=23155811 polypeptide=Lus10031479 locus=Lus10031479.g ID=Lus10031479.BGIv1.0 annot-version=v1.0 ATGAACCAAGAAGAAATCTTCAGGTTTGGTTACGTGATAATGGATGGGAACTCGACATTGTTTGGGAGGTGCAGCGCCAATGGATCGAGAGTTGTTATTG AACGATTCTCTAACAGCAGTCGTTTACCTAAGAAGCATGGCAAGGGAGGGGCATACGCCCTTCACCTTGCTGCCAAACGCCAGGCGGACCGCCGTGCGCA CTATGTGAGGAAGGCTGCTACGTTTGCGACCAATCTGTACGTGAACCCGGAATCAGACCAGGCAAACGTAGAGGGTCTTATTCTGGCCACCTGTGAATTC GGGCCTGATCTAAAGACTTCAGATTTCCTCCACCACCAACTGAAGATCAGGTTTTTGGCAGTCGTTGAGGTGGATGATAGAGATGATGACGGTTTCCTAA AAGCCATTGTCCTCTCAGATGACGTGCGGGCAAGAGCAAGGCTTATCATCGAAGAAAACATAGTCAATATGATCAACGATGGGCTGAAAAATCAAACATC TGTGTATGGTGTATTCAAGACCCCGCGGGCTCTTGAACAGGGTAATATCGAAACCCTAGCTGTTTCACAAGACACGGTCATCACTCGATTTGTGCTGAGG AACGCAGCAACTGGCGAGACAACCATCAGATGGCTGTTTCCCTACCAGGAGGACGACAGTGCCAACTTCAGGGATGACAATGTGGTGCTGGAAATAGATG GTCGAGAGCCGCTAATCGATTGGCTGTTGCAGCAGCAAGACCAAGGGAATCTTGGCTGCAGCCTTGAAGTCATCAGCAGAGCAACTGGTAGGGGGGAACA GTTTTGGCAATGCCGGTGCGGGATTGGAGCAATTCTCAAGCATCAACCAAATTAA
AA sequence Show only first row Show all	>Lus10031479 pacid=23155811 polypeptide=Lus10031479 locus=Lus10031479.g ID=Lus10031479.BGIv1.0 annot-version=v1.0 MNQEEIFRFGYVIMDGNSTLFGRCSANGSRVVIERFSNSSRLPKKHGKGGAYALHLAAKRQADRRAHYVRKAATFATNLYVNPESDQANVEGLILATCEF GPDLKTSDFLHHQLKIRFLAVVEVDDRDDDGFLKAIVLSDDVRARARLIIEENIVNMINDGLKNQTSVYGVFKTPRALEQGNIETLAVSQDTVITRFVLR NAATGETTIRWLFPYQEDDSANFRDDNVVLEIDGREPLIDWLLQQQDQGNLGCSLEVISRATGRGEQFWQCRCGIGAILKHQPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	0	1
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	1.0	0.9487
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	4.9	0.9065
					Lus10000400 [exp]	5.1	0.9214
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	5.1	0.8969
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	6.2	0.9214
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	6.2	0.7889
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	7.2	0.9214
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	8.1	0.9214
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	8.8	0.9214
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	9.5	0.9214

Compare expression of checked genes

Lus10031479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.