Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11420 625 / 0 ATTIF3A1, ATEIF3A-1, TIF3A1, EIF3A eukaryotic translation initiation factor 3A (.1) AT4G23330 58 / 7e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031477 [exp] 1194 / 0 AT4G11420 1290 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015204 [exp] 1094 / 0 AT4G11420 1284 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015201 [exp] 667 / 0 AT4G11420 935 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015202 [exp] 313 / 6e-101 AT4G11420 313 / 2e-101 eukaryotic translation initiation factor 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011900 [exp] 932 / 0 AT4G11420 1028 / 0.0 eukaryotic translation initiation factor 3A (.1) Potri.005G021400 [exp] 646 / 0 AT4G11420 1083 / 0.0 eukaryotic translation initiation factor 3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10031481 pacid=23156045 polypeptide=Lus10031481 locus=Lus10031481.g ID=Lus10031481.BGIv1.0 annot-version=v1.0 ATGATTCCGGAGCTTTTTACTGGTTTCTTCTCGATACCTCATTGGCTCGCCTGCGATTCGTTTTATTCATCGGCCGGTTTTGAAATTTGGTTTGTGTTTG TGCGTCTGTGGCAGGTCGGTAGGGTTCTGATTCCTTCGTTGCAAAACATGTCGAATTTCGCGAGGCCGGAGAACGCGCTGAAGCGAGCCGAAGAGCTGAT AAATGTTGGACAAAAGCAGGAAGCTCTTCAGACGCTTCACAATGTCATTACGTCGAAAAGGTACAGGGCATGGCAGAAGACCCTGGAGAAGATTATGTTC AAATATGTGGAGCTCTGCGTCGAGATGAGGAGGGGAAGATTCGCGAAAGACGGGCTGATCCAGTACAGGATTGTTTGCCAGCAAGTGAATGTGGCTTCCT TGGAGGAAGTGATCAAGTATTTTATTCAGCTCTCCACCGAGAAGGCTGAACAAGCTCGTACTCAGGCGCAAGCTCTGGAGGATGCTCTGGATGTTGATGA CCTGGAAGCGGACAAGAGGCCGGAAGATCTGATGCTCAGTTATGTTAGTGGGGAGAAAGGGAAGGAAAGGTCTGACCGTGAGCTTGTCACTCCTTGGTTC AAGTTTCTGTGGGAGACCTACAGAACTGTGCTCGAGATTCTGAGGAACAACTCCAAATTGGAAGCCTTATATGCGATGACTGCTCATCGAGCCTTCCAAT TCTGCAAGCAGTACAAGCGAACAACTGAGTTCAGGAGACTTTGTGAGATCATCAGAAATCATTTGGCAAACCTTAACAAGTACAGAGATCAAAGGGACCG ACCTGATCTGTCTGCTCCTGAAAGCTTGCAATTGTATCTTGATACCAGATTTGAGCAGCTCAAGGTGGCTACTGAGCTTGAGCTCTGGCAGGAAGCTTTC CGGTCTGTGGAGGATATTCACGGACTAATGTGCCTGGTGAAGAAAACCCCCAAATCTTCATTGATGGTGGTATACTATGCCAAGTTGACTGAAGTATTTT GGATATCTTCAAGCCATCTTTATCATGCTTATGCATGGTTCAAGCTTTTTAGCCTTCAAAAAGGCTTCAACAAGAACCTAAGTCAGAAAGATTTACAGCT GATAGCGTCTGCTGTTGTTTTGGCAGCTCTAGCCGTGACTCCATATGACACCCGCCGTGCTTCTCATGTGGAACTTGAAAATGAGAAGGAGCGTAACTTG AGAATGTCAAATCTCATCGGGTTCAACTTGGATCCCAAATCTGAGAGCAGAGAAGTGGTCTCTCAGGTGTATCAGACAATGAAGATAGGGAAATTATCAC AAATGATTCCGTTCTTCGATATTTCCGTTGTTGAGAAAATCTCCGTTGATGCAGTCAAGCATAAGTTCATTGCCATGAAAGTTGACTATATGAAGAAGGC TGTCATGTTCGGAGACGGGCTCCTCGAATCGGACGGTTTGCAAGATCATTTAACTGCTTTTGCTGAATCCCTGAACAAAGCAAGGGCAATGATCTACCCA CCTGCTAAGAGATCGTCAAAACTTGCTGACATCTTGCCCATGCTTGGGGAGACAGTCGACAAGGAACACAAAAGACTTCTTGCTAGGAAGTCAATCATCG AGAAGCGCAAAGAAGAACAAGAACGACAACTTCTTGAAATGGAACGGGAGCAAGAGTCGAAGAGATTGTCTGAGCAGAAGAGAACCGAAGAGCAAGAACA GAAGAGGCTCGCAGCTGAGTACGAGCGCCTGAAGAATCAGAGGATGCTGCGTGAGATAGAGGAGCGTGAGCTTGAAGAAGCGCAGGCATATCTTGAGGAA GCTGAGAAGCGCAGTAAAAAGAAGGGTGGAAAGAAGCCTATCATAGAAGGAGAGAAAGTTACCAAGGAAACTCTGATGGAAAGGGCTAGGAACGAGCAGC TGAGGGAAAGGCAAGAAATGGAGAAGAAGCTTCAAAAGGCTGTTAAAACAATGGATCACCTGGAACGCGCTAAAAGAGAAGAAGCTGCTCCTTTGATCGA AGCCGCCTTCCAGCAACGACTCGTGGAAGAGCAGGCCCTCCATGAACGTGAACAACAGCTTGAGGTTGAACTTAGCAGGCAGCATCACGAAGAAGACCTC AAGCAGAAGAATCGGCTAGCCCGAATGATCGAAAGCAAGAATGTTTTCCAGGAGAGGGTGATCAGCCGTCGGCAAGAGGAGTTCGATCGAAGGAGAATCG AGAAGGAAGCGAGACTCAACCAGATTATGCAAGCTAGGAAGCAAGAAAGAGAGATTCAGAGGAAGAAAGTATTCTATGTTAGGGCTGAGATGGACAGGCT GGCTAAGCTTAAGGAAGAGGAGGAAGCTAGAAAGCGCGAAGAGGCGGAGAGACGGAAGAAGGAAGAATCGGAGAGAAAGGCGAAGCTGGATGAAATCGCA GCGAAGCAGAGGCAGAGAGAGCAAGAACTGGAAGAGAAAGAGAGGTTGAGGAGAGAGGCTCTCTTGTCTGGAAGGACAACATCAACAGATGGACCTTCCA GACCTACCGTTGATGCCCCTGCCGGAGCTGCTGCTCCTGCAGCGGCAGCAGCAGCTGCCGCACCATCCTCCGGAGCTGCGAAATATGTTCCTAGGTTCCG TCGCAGTGGCGACAGTGCCCAGGGTCCTCCACCAGACACAGGCCGGAGCAGTGGAGCCAGGCCTGGTCCGGAATCAGCTGATCGCTGGACCAGCAGTGGC GCTGCTAGGACTGCAGAGCCAGACCGATGGACAAGCGGCGGAGCAAGGCAGCTGCAGGGACCACCTCCTACTGGTGGTGGCCGGCCTGCTGCCGACGATC GCAACCCTCTGGGTGACAGGTGGCGCGGCGGCGCAGGTAGTTGGTCTGCTTCTAGGCGCGAGCGTTGA
AA sequence Show only first row Show all	>Lus10031481 pacid=23156045 polypeptide=Lus10031481 locus=Lus10031481.g ID=Lus10031481.BGIv1.0 annot-version=v1.0 MIPELFTGFFSIPHWLACDSFYSSAGFEIWFVFVRLWQVGRVLIPSLQNMSNFARPENALKRAEELINVGQKQEALQTLHNVITSKRYRAWQKTLEKIMF KYVELCVEMRRGRFAKDGLIQYRIVCQQVNVASLEEVIKYFIQLSTEKAEQARTQAQALEDALDVDDLEADKRPEDLMLSYVSGEKGKERSDRELVTPWF KFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAF RSVEDIHGLMCLVKKTPKSSLMVVYYAKLTEVFWISSSHLYHAYAWFKLFSLQKGFNKNLSQKDLQLIASAVVLAALAVTPYDTRRASHVELENEKERNL RMSNLIGFNLDPKSESREVVSQVYQTMKIGKLSQMIPFFDISVVEKISVDAVKHKFIAMKVDYMKKAVMFGDGLLESDGLQDHLTAFAESLNKARAMIYP PAKRSSKLADILPMLGETVDKEHKRLLARKSIIEKRKEEQERQLLEMEREQESKRLSEQKRTEEQEQKRLAAEYERLKNQRMLREIEERELEEAQAYLEE AEKRSKKKGGKKPIIEGEKVTKETLMERARNEQLRERQEMEKKLQKAVKTMDHLERAKREEAAPLIEAAFQQRLVEEQALHEREQQLEVELSRQHHEEDL KQKNRLARMIESKNVFQERVISRRQEEFDRRRIEKEARLNQIMQARKQEREIQRKKVFYVRAEMDRLAKLKEEEEARKREEAERRKKEESERKAKLDEIA AKQRQREQELEEKERLRREALLSGRTTSTDGPSRPTVDAPAGAAAPAAAAAAAAPSSGAAKYVPRFRRSGDSAQGPPPDTGRSSGARPGPESADRWTSSG AARTAEPDRWTSGGARQLQGPPPTGGGRPAADDRNPLGDRWRGGAGSWSASRRER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	1.4	0.9602
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	4.2	0.9430
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	4.6	0.9521
AT1G69070			unknown protein		Lus10019174 [exp]	4.9	0.9525
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	6.6	0.9516
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	6.9	0.9484
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	9.2	0.9485
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	9.8	0.9413
AT1G79150			binding (.1)		Lus10034234 [exp]	10.2	0.9268
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	10.9	0.9321

Compare expression of checked genes

Lus10031481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.