Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11060 278 / 3e-94 MTSSB mitochondrially targeted single-stranded DNA binding protein (.1) AT3G18580 104 / 1e-26 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015200 [exp] 259 / 7e-87 AT4G11060 202 / 2e-66 mitochondrially targeted single-stranded DNA binding protein (.1) Lus10027237 [exp] 103 / 3e-26 AT3G18580 278 / 1e-95 Nucleic acid-binding, OB-fold-like protein (.1) Lus10038946 [exp] 99 / 1e-24 AT3G18580 243 / 7e-82 Nucleic acid-binding, OB-fold-like protein (.1) Lus10032660 [exp] 47 / 2e-05 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011800 [exp] 297 / 1e-101 AT4G11060 279 / 2e-96 mitochondrially targeted single-stranded DNA binding protein (.1) Potri.012G058800 [exp] 110 / 1e-28 AT3G18580 261 / 2e-88 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10031482 pacid=23155972 polypeptide=Lus10031482 locus=Lus10031482.g ID=Lus10031482.BGIv1.0 annot-version=v1.0 ATGAGCTCCCTCTTGAGATTCTCTAAGCTGTTACAGTCCTCTCGTCAAACCACCCTCGTTCCATCTTCAGCGGCTGGTGCTCAGAAAAGTGTAAGGTCTC TGTTTTCGACGGGGTCATTTGATGATGATGATATCAATGCGCTCCCGCGTGAGGAAGTGGCAGCAGATTTCGATGATTTCATTGCTGACAAGCCTGAGTT GCAGCTCCAAGGTGTTGATCCCAGGAAAGGCTGGGGATTCCGTGGCGTGCACAAGGCAATAATCTGTGGGAAAGTGGGGCAAGCTCCGGTTCAAAAGATC TTGAGAAATGGTCGAAGTGTAACGATCTTTACGGTTGGAACTGGTGGGTTGTTTGACCAACGACTCGTGAGCAATAGAGACCTTCCCAAACCAGCTCAGT GGCACCGAATCGCTGTGCACAATGAATCTCTTGGTGCTTATGCAGTTCAAAAACTTGCCAAGAACTCTGCAGTCTATGTTGAAGGGGATATTGAAACTAG GGTCTACAATGACAGCATCAGCGGGGAAGTGAAAAACATACCAGAGATATGCATTCGTCGCGACGGAAGGATTCGGCTCGTCCAGGGCGGAGAAACCACC CGAAATTTCTCGTTTGAGGATCTGAGTAAGCCCTCACATAGTGCAACTTGTTTTAAATTGTTCCCAAAAGGTCTTACCTGCTCAATCCCCGGTTTCGACA TGAACCCCGAGGTTAGAGAGGGTAAGGCCCTGACACTGCTTGAGGTCATGAATTGGGCGACTCGTGGTGGCGCCATTCAGAAGTTATCTTTGAAAGTTGA CTCAATTGAGGTTGCCGCAGGCGTGGGAAGCCGCTTACGAGACTTTACAGAGTTCGGTCATAAAATTGTAAATGCTATTGAAGTTAATATCTTGAGGGAA AGCGGTAATTTAATGAGTCAAGTTCGAGTCGGGGTATGTTCGACTTGA
AA sequence Show only first row Show all	>Lus10031482 pacid=23155972 polypeptide=Lus10031482 locus=Lus10031482.g ID=Lus10031482.BGIv1.0 annot-version=v1.0 MSSLLRFSKLLQSSRQTTLVPSSAAGAQKSVRSLFSTGSFDDDDINALPREEVAADFDDFIADKPELQLQGVDPRKGWGFRGVHKAIICGKVGQAPVQKI LRNGRSVTIFTVGTGGLFDQRLVSNRDLPKPAQWHRIAVHNESLGAYAVQKLAKNSAVYVEGDIETRVYNDSISGEVKNIPEICIRRDGRIRLVQGGETT RNFSFEDLSKPSHSATCFKLFPKGLTCSIPGFDMNPEVREGKALTLLEVMNWATRGGAIQKLSLKVDSIEVAAGVGSRLRDFTEFGHKIVNAIEVNILRE SGNLMSQVRVGVCST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11060		MTSSB	mitochondrially targeted singl...		Lus10031482 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	5.1	0.8572
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	7.0	0.8596
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	18.5	0.8302
AT1G15420			unknown protein		Lus10030351 [exp]	26.8	0.8304
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	29.5	0.8453
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	29.8	0.8480
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	33.6	0.8310
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	35.7	0.8310
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10021907 [exp]	43.4	0.8293
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	45.1	0.7499

Compare expression of checked genes

Lus10031482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.