Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46940 65 / 3e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G02250 57 / 3e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G55770 53 / 9e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G64620 50 / 1e-07 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT5G46930 49 / 2e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G02550 49 / 6e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17230 48 / 1e-06 invertase/pectin methylesterase inhibitor family protein (.1) AT5G46950 46 / 2e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G47340 47 / 3e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46970 45 / 6e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015199 [exp] 297 / 7e-104 AT5G46940 67 / 8e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10029877 [exp] 162 / 8e-51 AT5G64620 67 / 7e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10020664 [exp] 157 / 4e-49 AT5G64620 67 / 2e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10008201 [exp] 89 / 4e-22 AT4G02250 113 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001464 [exp] 88 / 8e-22 AT4G02250 112 / 1e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10019498 [exp] 53 / 1e-08 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10003530 [exp] 47 / 1e-06 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002933 [exp] 47 / 2e-06 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10043346 [exp] 46 / 2e-06 AT5G46940 69 / 3e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134900 [exp] 84 / 2e-20 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.004G016500 [exp] 78 / 6e-18 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G191500 [exp] 69 / 1e-14 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086600 [exp] 68 / 3e-14 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G044100 [exp] 66 / 2e-13 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.005G023100 [exp] 67 / 3e-13 AT5G46940 45 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.005G023201 [exp] 67 / 3e-13 AT5G46940 45 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.005G023050 [exp] 67 / 4e-13 AT5G46940 45 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086500 [exp] 65 / 5e-13 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G127500 [exp] 64 / 6e-13 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031483 pacid=23155848 polypeptide=Lus10031483 locus=Lus10031483.g ID=Lus10031483.BGIv1.0 annot-version=v1.0 ATGATCTTCACACTATGCCTCCTCTTCATTTCCATCACACCTCACCAATCCAATGCTCAAGCTCCAGCTCCAGCTCCGGCTTACACAACAACGACAACAA CGACGACGACAACCGGTCCCACGATGTCGAAGCCGGAGCTGCTAAACAAAGCCTGTCACTGCAAATACAAGCCAGTGTGCATGGCCTTCCTCGGCTCCTT CCCGGAGTCGGAGGTGAAGGACATGCACGGGCTGGCGGAATACGCGCTCAAGATGGTTGCCCTGAACGCGACCAAGGTCTACGGGGACATCAAGAAGATG GAGGCCACGTCCACGGACGATGTGGTGCAGCAGAAGCTGAACGACTGCGGGGAGGATTATCAGGATGTCATTGATCAGTTCGAGGACTCGATGCCCGCGC TGGACGCGAAGGCTTACGACAATGTGATCACGTTCATAACCGCGGCTATGAACGATGTCCAAGGTTGCGAAGACGGGTTCAAGCAGCCGCCCGTGGCTAA GTCTCCCCTCACTGAGACTAATGATGCTGTGACACAGTTGTGCAATGTTTGTTTGTCCATTGTTAACATGGTTGGCAAGTAG
AA sequence Show only first row Show all	>Lus10031483 pacid=23155848 polypeptide=Lus10031483 locus=Lus10031483.g ID=Lus10031483.BGIv1.0 annot-version=v1.0 MIFTLCLLFISITPHQSNAQAPAPAPAYTTTTTTTTTTGPTMSKPELLNKACHCKYKPVCMAFLGSFPESEVKDMHGLAEYALKMVALNATKVYGDIKKM EATSTDDVVQQKLNDCGEDYQDVIDQFEDSMPALDAKAYDNVITFITAAMNDVQGCEDGFKQPPVAKSPLTETNDAVTQLCNVCLSIVNMVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46940			Plant invertase/pectin methyle...		Lus10031483 [exp]	0	1
					Lus10010602 [exp]	5.7	0.7081
					Lus10025095 [exp]	9.3	0.7835
					Lus10025405 [exp]	9.5	0.5918
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10012760 [exp]	13.8	0.7657
					Lus10007927 [exp]	18.2	0.7505
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	21.0	0.7505
					Lus10023587 [exp]	23.5	0.7505
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	25.7	0.7505
AT5G07610			F-box family protein (.1)		Lus10042990 [exp]	26.7	0.5745
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	27.7	0.7505

Compare expression of checked genes

Lus10031483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.