Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 234 / 2e-75 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56250 224 / 1e-71 ATPP2-B14 phloem protein 2-B14 (.1) AT1G56240 224 / 2e-71 ATPP2-B13 phloem protein 2-B13 (.1) AT2G02360 171 / 3e-51 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 164 / 7e-48 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 159 / 1e-46 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02230 157 / 6e-45 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02250 154 / 4e-44 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 147 / 1e-41 ATPP2-B8 phloem protein 2-B8 (.1) AT1G80110 145 / 3e-41 ATPP2-B11 phloem protein 2-B11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015208 [exp] 476 / 2e-170 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031473 [exp] 427 / 4e-152 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10015209 [exp] 387 / 2e-135 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10029872 [exp] 346 / 2e-119 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020674 [exp] 343 / 5e-118 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 334 / 1e-114 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10031472 [exp] 311 / 6e-107 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10018171 [exp] 181 / 8e-54 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10029674 [exp] 171 / 1e-50 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 309 / 6e-105 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 290 / 4e-97 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 191 / 1e-58 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 184 / 1e-55 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 172 / 2e-51 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 167 / 4e-49 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 159 / 2e-46 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 158 / 4e-46 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 124 / 4e-34 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.013G012400 [exp] 96 / 2e-22 AT3G05625 357 / 3e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031484 pacid=23155805 polypeptide=Lus10031484 locus=Lus10031484.g ID=Lus10031484.BGIv1.0 annot-version=v1.0 ATGTCGACGGTCAACGTCAACTCCCTCCCGGAAGACTGCCTCTCTTCAATCCTCTGTTTCACATCCCCACAGGACGCCTCCCGCTCCTCCGCCGTATCCT CCCACCGCAACTCCGCCGCCGACTCCGACGCCGTCTGGAACAGCTTCCTACCCTCCGACTACCCCCGCATTGTTGCCGAATCGATCCCGCCCCTCGAGTT CTCATCCAAGAAGGAGCTTTTCCACCTCCTCTGCGACTCTGTTCTCATCGATGGCGGACTGAAAATGTTCAAGCTGGAGAAATCAACAGGGAAGAAAAGC TACGTACTTTCCGCGAGGGATCTCTCAATAACATGGAGTAACGAACCATTGTACTGGTCGTGGACTTCCGATTCGGAATCGATGTTTCCGGAAGTGGCTT TGCTAAGGACAATGTCGTGGCTGGAGATCGACGGTCGGATCAACACTGGAATGCTGACAGCGAATACTAAGTACGGAGCGTATCTGTTGATTAAAATAAC GGATAGATCGTACGGTCTGGATTCGATGGCGTCGGAGGTGACAGTTCGAGTGGGTGGTAATGAAGTGTGTAGTAGTGGAACGGCTTACTTGAGGGGCAAG AGAAACGAGACGGTTTCGATGATGGAGCGGCTGATGTACGGACACCGGACGGAGGTGTCGAAATTGTCGACGGTTGCCATGGCCGGAGGAGGGGAAGGGA GGTTGCCGGAGGAGAGGGGAGATGGGTGGTTGGAAGTTGAGATTGGTGAGTTTTGGAGTGGGGAAAGAGATGAAGAAGTTAGGATGAGTTTGAGGGAAGT GAAAGGTTACCATTTGAAAGGGGGGCTTGTTGTTCAAGGCATTGAAGAGTCAATACGGTGCTTTCTCTGTGAAGCTCAGTTGTATGGAGTTGCTGAGGCG AGGAAGCGATATATCGAGAAGGAAGCGGATGCAGCTAAGCTTCATCTAGTTGCAGCTTGCAAGTCTCTTTATGGACAAAGATCTGATGACTATATGGCTT CTCTTGCTAAGGTTCACTGTCAATGTAGAAATTGGAGCATTGATTGA
AA sequence Show only first row Show all	>Lus10031484 pacid=23155805 polypeptide=Lus10031484 locus=Lus10031484.g ID=Lus10031484.BGIv1.0 annot-version=v1.0 MSTVNVNSLPEDCLSSILCFTSPQDASRSSAVSSHRNSAADSDAVWNSFLPSDYPRIVAESIPPLEFSSKKELFHLLCDSVLIDGGLKMFKLEKSTGKKS YVLSARDLSITWSNEPLYWSWTSDSESMFPEVALLRTMSWLEIDGRINTGMLTANTKYGAYLLIKITDRSYGLDSMASEVTVRVGGNEVCSSGTAYLRGK RNETVSMMERLMYGHRTEVSKLSTVAMAGGGEGRLPEERGDGWLEVEIGEFWSGERDEEVRMSLREVKGYHLKGGLVVQGIEESIRCFLCEAQLYGVAEA RKRYIEKEADAAKLHLVAACKSLYGQRSDDYMASLAKVHCQCRNWSID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	0	1
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	1.4	0.9138
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	1.7	0.9216
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	5.9	0.8934
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	7.0	0.8793
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	8.1	0.8506
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10042833 [exp]	8.5	0.8093
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	9.2	0.9016
					Lus10006091 [exp]	11.3	0.8999
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	11.6	0.8277
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	11.8	0.8504

Compare expression of checked genes

Lus10031484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.