Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05590 311 / 4e-107 RPL18 ribosomal protein L18 (.1) AT5G27850 306 / 4e-105 Ribosomal protein L18e/L15 superfamily protein (.1) AT1G09150 293 / 4e-100 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) AT2G47570 223 / 4e-73 Ribosomal protein L18e/L15 superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015198 [exp] 343 / 2e-119 AT3G05590 333 / 2e-118 ribosomal protein L18 (.1) Lus10029879 [exp] 342 / 6e-119 AT5G27850 330 / 3e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10041264 [exp] 340 / 2e-118 AT5G27850 330 / 4e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10020659 [exp] 340 / 5e-114 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10015197 [exp] 328 / 1e-112 AT1G09150 314 / 5e-110 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Lus10021971 [exp] 338 / 2e-111 AT5G42390 629 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10041458 [exp] 47 / 1e-05 AT1G71350 810 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202800 [exp] 330 / 4e-114 AT3G05590 340 / 3e-121 ribosomal protein L18 (.1) Potri.014G127300 [exp] 329 / 6e-114 AT3G05590 334 / 8e-119 ribosomal protein L18 (.1) Potri.005G023500 [exp] 324 / 5e-112 AT3G05590 320 / 2e-113 ribosomal protein L18 (.1) Potri.013G013600 [exp] 321 / 7e-111 AT3G05590 337 / 8e-120 ribosomal protein L18 (.1) Potri.013G013700 [exp] 308 / 5e-106 AT1G09150 307 / 2e-108 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Potri.005G023600 [exp] 307 / 3e-105 AT1G09150 305 / 1e-107 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Potri.013G096600 [exp] 54 / 8e-08 AT1G71350 818 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01472 [flax] [poplar] PUA PUA domain CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10031485 pacid=23156061 polypeptide=Lus10031485 locus=Lus10031485.g ID=Lus10031485.BGIv1.0 annot-version=v1.0 ATGTTCAAGAAGTTTTCCGGCGAGGAGGTGTCGGCTCAGAACCAGGTGAAGGCGTCGGTTCAGAGGAGAATCCGGCAGAGTATTGCGGAAGAGTACCCGG GTTTGGAACCAGTGATGGAGGATTTGCTGCCGAAGAAGTCTCCTCTAGTTGTTGTCAAGTGTCAAAATCATCTGAATTTGGTCGTGGTGAACAATGTTCC GTTGTTCTTCAACATCAGAGATGGTCCTTACATGCCTACTTTGAGACTTCTTCATCAATATCCTGATATCATGCAAAAGATACAGGTTGACAGAGGCGCA ATTAGATTCGTTCTTTCTGGCGCTAACATAATGTGCCCTGGCCTTACGTCACCCGGTGGTGTCTTGGATGACGAAGTTGAAGCAGAAACACCCGTGGCTA TAATGGCTGAAGGAAAGAAGCATGCCCTCGCTATCGGCTACACTAAAATGTCAGCAAAAGACATACGATCAATCAACAAGGGCATCGGGGTGGACAACCT CCATTACCTCAATGACGGTCTTTGGAAGGGTATCGATTTGAAGGCAGGAGGTAAGAGGAAGAAGACCAAGAGGACGGCTCCCAAGTCCAATGATATCTAC CTCAAGCTTCTCGTCAAGCTGTACCGATTTCTCGTGAGGAGGACTGGAAGCAGCTTCAACGGTGTGATTTTGAAGAGGCTGTTCATGAGCAAGGTTAACA AGCCCCCGCTATCTCTCTCCAGGCTCATCCGATTCATGAAGGGAAAGGAGGGGAAGATTGCTGTGATTGTTGGAACAATCACTGATGACATCAGAGTTTA TGATGTTCCAGCTATGAAGGTTACTGCTTTGAGGTTCACTGAGACTGCTAGGGCTAGAATTGAGAAGGCTGGTGGTGAGTGCTTGACATTCGACCAGCTC GCCTTGAGAGCTCCTCTCGGCCAGAACACGGTTCTGCTCAGGGGTCCTAAGAACGCCCGTGAGGCAGTGAAGCACTTTGGTCCTGCCCCTGGTGTGCCTC ACAGCCACACCAAGCCATATGTCAGGTCGAAGGGAAGGAAGTTTGAGAAAGCTAGGGGAAGGAGGAACAGCAGAGGATTCAGGGTTTAA
AA sequence Show only first row Show all	>Lus10031485 pacid=23156061 polypeptide=Lus10031485 locus=Lus10031485.g ID=Lus10031485.BGIv1.0 annot-version=v1.0 MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVMEDLLPKKSPLVVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPDIMQKIQVDRGA IRFVLSGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKKHALAIGYTKMSAKDIRSINKGIGVDNLHYLNDGLWKGIDLKAGGKRKKTKRTAPKSNDIY LKLLVKLYRFLVRRTGSSFNGVILKRLFMSKVNKPPLSLSRLIRFMKGKEGKIAVIVGTITDDIRVYDVPAMKVTALRFTETARARIEKAGGECLTFDQL ALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	0	1
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	2.2	0.9563
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	3.2	0.9420
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	3.2	0.9562
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	4.2	0.9466
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	4.5	0.9420
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10020500 [exp]	5.7	0.8925
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	6.0	0.9171
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	6.5	0.9405
AT5G04800			Ribosomal S17 family protein (...		Lus10041076 [exp]	6.6	0.9315
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	6.9	0.9407

Compare expression of checked genes

Lus10031485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.