Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71160 381 / 1e-129 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT1G68530 380 / 1e-128 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 377 / 2e-127 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G19440 373 / 1e-125 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 356 / 5e-119 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G04220 342 / 1e-113 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G01120 342 / 3e-113 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 340 / 3e-113 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G26640 338 / 6e-112 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT5G49070 332 / 1e-110 KCS21 3-ketoacyl-CoA synthase 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020662 [exp] 522 / 0 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10029880 [exp] 402 / 1e-137 AT1G71160 337 / 9e-112 3-ketoacyl-CoA synthase 7 (.1) Lus10034319 [exp] 392 / 3e-133 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 389 / 4e-132 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10002533 [exp] 378 / 1e-127 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 374 / 3e-126 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 373 / 1e-125 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 373 / 1e-125 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10012611 [exp] 356 / 8e-119 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015100 [exp] 477 / 3e-167 AT1G71160 486 / 6e-170 3-ketoacyl-CoA synthase 7 (.1) Potri.010G125300 [exp] 387 / 3e-131 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.001G211400 [exp] 383 / 2e-130 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1) Potri.008G120300 [exp] 380 / 7e-129 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.009G116700 [exp] 377 / 3e-127 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 372 / 3e-125 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 368 / 7e-124 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 358 / 9e-120 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 347 / 1e-115 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.002G178000 [exp] 347 / 2e-115 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10031486 pacid=23156027 polypeptide=Lus10031486 locus=Lus10031486.g ID=Lus10031486.BGIv1.0 annot-version=v1.0 ATGACCGGCCCGAGCAGCAAAATCTACCTCGTGGATTTCGTGTGCTTCAAGGGACAGAAGACCCACCGAGTCCCGACCTCGACGTTCATAGAGCACGCGG AGATCATAGGCAACTTCGACAGGGACACGGTCGAGTTCCAGACCAAAGTTGTCGAGCGTTCAGGGATCGGAAACCAGAGCTACCTCCCCGAAGGGATCCA TTTCTTACCTCCGAATACATCGTTCACGCAAGGCGTCCTCGAGCTCGAGCTAGTGCTGTCTTCCACAGTGAAAGAACTCTTGACGAAGCTGGAAGTCAAC CCCGAGAGCATCGATGTAGTGATCGTGAATTGCAGCCTTGTAACCCCGACGCCTTCCCTGTCTGCGATGGTGATCAACAAATTCGGGTTATGGAGCAACG TGAGGAGCTATAACTTATCCGGGATGGGGTGCAGTGCGGGTTTGCTGTCTTTATCTCTGGGGAAAGAGATGCTAACAGTTCATAAGAACTGCACGGTTCT TATACTGAGCATGGAGGCCATCTCTCCGAGCATTTACGAAGGGAAGATCAAATCGATGCTGCTGTCGAACTGCATATTCCGGATGGGAGGCGCGGCGGTC TTGCTGTCAAATCGTGAGAGCGACAGGGAGAGGGCCAAGTACGAACTCCAGCACGTGGTGACCACCAGCATCGCCTCGAAAGACATATCGTACAAGTGCG TGTTCCACGAGACGGACTCCGAGGGGTACACCGGTATGAACTTGTCGAGGTCGATCCTGCAAGTGGCGAGCGAAGGGTTGAGGACGAACCTCACGATGCT AGCTAGATTAGCGTTGCCCTATACTGAGCTGATCAGGTACGGAGTTACATTGGTGTGGAAGCATACCGGTACCGGAGTACTTGTCAACGTACCGGACTTC AAGAAGGCGTTCCACCATTTCTGTATCCATGCCGGAGGGAAAGCTGTGATTGACGGTATGAAGAAGACGCTAAACTTGACAGATAGGGACGTGGAGGCGT CTAAGATGACGCTCCATAGGTTTGGGAATACTTCGTCCTCGTCCATTTGGTATTCTCTAAGCTATCTGGAGGCGAAAGAAAGGATTCGGAGAGGTGAACA AGTTTGGCAGATAGGGTTTGGGAGTGGGTTTAAATGCCATAGTGCTGTCTGGAAATGCATTTCTAACATGAATTCGGACCGTTGGAATGTTTGGTCCGAT ACCATTGACCAATATCCATTGGAAGTGCCCGACTGCGCGGATCACTAG
AA sequence Show only first row Show all	>Lus10031486 pacid=23156027 polypeptide=Lus10031486 locus=Lus10031486.g ID=Lus10031486.BGIv1.0 annot-version=v1.0 MTGPSSKIYLVDFVCFKGQKTHRVPTSTFIEHAEIIGNFDRDTVEFQTKVVERSGIGNQSYLPEGIHFLPPNTSFTQGVLELELVLSSTVKELLTKLEVN PESIDVVIVNCSLVTPTPSLSAMVINKFGLWSNVRSYNLSGMGCSAGLLSLSLGKEMLTVHKNCTVLILSMEAISPSIYEGKIKSMLLSNCIFRMGGAAV LLSNRESDRERAKYELQHVVTTSIASKDISYKCVFHETDSEGYTGMNLSRSILQVASEGLRTNLTMLARLALPYTELIRYGVTLVWKHTGTGVLVNVPDF KKAFHHFCIHAGGKAVIDGMKKTLNLTDRDVEASKMTLHRFGNTSSSSIWYSLSYLEAKERIRRGEQVWQIGFGSGFKCHSAVWKCISNMNSDRWNVWSD TIDQYPLEVPDCADH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10031486 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10008689 [exp]	9.6	0.7316
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10004226 [exp]	14.8	0.7328
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	17.9	0.6749
					Lus10041547 [exp]	19.3	0.6935
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016121 [exp]	42.4	0.6369
					Lus10007207 [exp]	47.3	0.7015
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	51.2	0.6569
AT3G02125			unknown protein		Lus10013196 [exp]	63.9	0.6658
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	65.9	0.6737
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	66.3	0.6711

Compare expression of checked genes

Lus10031486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.