Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56220 120 / 2e-36 Dormancy/auxin associated family protein (.1.2.3.4) AT1G54070 51 / 8e-09 Dormancy/auxin associated family protein (.1) AT1G28330 47 / 2e-07 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) AT5G44300 38 / 0.0003 Dormancy/auxin associated family protein (.1) AT2G33830 37 / 0.0007 Dormancy/auxin associated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015193 [exp] 177 / 2e-58 AT1G56220 134 / 3e-41 Dormancy/auxin associated family protein (.1.2.3.4) Lus10020661 [exp] 138 / 7e-43 AT1G56220 126 / 2e-38 Dormancy/auxin associated family protein (.1.2.3.4) Lus10029881 [exp] 136 / 2e-39 AT5G27830 245 / 9e-80 unknown protein Lus10025446 [exp] 50 / 7e-09 AT2G33830 82 / 4e-22 Dormancy/auxin associated family protein (.1.2) Lus10013180 [exp] 51 / 2e-08 AT1G54070 78 / 5e-19 Dormancy/auxin associated family protein (.1) Lus10008142 [exp] 49 / 3e-08 AT1G54070 65 / 1e-14 Dormancy/auxin associated family protein (.1) Lus10015318 [exp] 45 / 1e-06 AT1G28330 117 / 2e-35 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) Lus10013997 [exp] 43 / 6e-06 AT1G28330 119 / 4e-36 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) Lus10015418 [exp] 43 / 6e-06 AT1G28330 120 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014900 [exp] 114 / 1e-33 AT1G56220 97 / 7e-27 Dormancy/auxin associated family protein (.1.2.3.4) Potri.005G024250 [exp] 112 / 3e-33 AT1G56220 86 / 2e-23 Dormancy/auxin associated family protein (.1.2.3.4) Potri.003G070500 [exp] 60 / 2e-12 AT1G54070 90 / 6e-24 Dormancy/auxin associated family protein (.1) Potri.001G164800 [exp] 53 / 1e-09 AT1G54070 67 / 3e-15 Dormancy/auxin associated family protein (.1) Potri.004G047100 [exp] 47 / 3e-07 AT1G28330 122 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05564 [flax] [poplar] Auxin_repressed Dormancy/auxin associated protein
Representative CDS sequence Show only first row Show all	>Lus10031488 pacid=23155872 polypeptide=Lus10031488 locus=Lus10031488.g ID=Lus10031488.BGIv1.0 annot-version=v1.0 ATGAGTCTCCTCGACCAGCTGTGGGACGACACCGTCGCCGGACCAAGGCCTGACAGCGGCCTCGGCAAGCTCAGGAAGCACAGAACCTTCAGTTTCCGAA CAGCCACCGGCAACGATTCCGATGGAGGCGGGAGCGTGAAATCGTACTCCGGCGGCGATGAAGCAGCAGCGCCAGAGGAATCCACGAGAGTGACACGCAG TATCATGATAGTGAGGCCGCCGGGGTACCAGAGCGGATCTACTCCCCCGGTGTCTCCTGCCGGATCTACTCCTCCGGTGTCTCCATTTTCCGGAAGCAGC AGAGGTTCATTCAGGTTCCGGAGAAGGTCAGCATCAGATGCAGAGGCGGCTGCTGCCACCGCTGCCGGAAGCCCAGTTGGACCAAGGAGCTCTTCTTCTC CTTACGACGTTTGA
AA sequence Show only first row Show all	>Lus10031488 pacid=23155872 polypeptide=Lus10031488 locus=Lus10031488.g ID=Lus10031488.BGIv1.0 annot-version=v1.0 MSLLDQLWDDTVAGPRPDSGLGKLRKHRTFSFRTATGNDSDGGGSVKSYSGGDEAAAPEESTRVTRSIMIVRPPGYQSGSTPPVSPAGSTPPVSPFSGSS RGSFRFRRRSASDAEAAAATAAGSPVGPRSSSSPYDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	3.3	0.8872
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	5.3	0.8439
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	7.3	0.8463
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	7.3	0.8611
AT1G24160			unknown protein		Lus10029213 [exp]	7.5	0.8053
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	7.7	0.8028
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	8.5	0.8222
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10004130 [exp]	9.8	0.8226
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	11.2	0.8412
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	15.2	0.8126

Compare expression of checked genes

Lus10031488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.