Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05580 566 / 0 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G27840 558 / 0 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G29400 482 / 1e-172 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 480 / 1e-171 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 479 / 2e-171 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 476 / 3e-170 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 472 / 1e-168 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 463 / 6e-165 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 455 / 1e-161 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G55260 289 / 1e-96 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020659 [exp] 587 / 0 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10029882 [exp] 579 / 0 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10042559 [exp] 488 / 3e-174 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 487 / 5e-173 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 481 / 5e-172 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 479 / 2e-171 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 479 / 3e-171 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040259 [exp] 477 / 2e-170 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 476 / 5e-170 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014700 [exp] 538 / 0 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.005G024100 [exp] 538 / 0 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 491 / 8e-176 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 487 / 3e-174 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 480 / 8e-172 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 479 / 2e-171 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G166300 [exp] 479 / 3e-171 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 477 / 1e-170 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 476 / 3e-170 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G098600 [exp] 471 / 5e-168 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10031489 pacid=23156035 polypeptide=Lus10031489 locus=Lus10031489.g ID=Lus10031489.BGIv1.0 annot-version=v1.0 ATGATGACGATGGAAGGTATGATGGAGATAGGAGCTGTGGACGACATAATACGGAGGCTGCTGGAAGGGAAAGGAGGAGGGAAACAGGTTCAGTTGTCGG AATGTGAGATCCGTCAATTGTGTGTTAATGCTCGTCAGATCTTCCTCTCCCAGCCTACTCTCGTCGAGATTAAAGCTCCGATTCGAATCTGCGGTGACTT ACACGGACAATACCAAGACCTTCTGAAGCTATTCGAGTACGGGGGCTACCCGCCATCGGCAAACTACCTATTCCTCGGAGACTACGTCGACAGAGGGAAG CAAAGCTTGGAGACCATATGCCTACTCCTGGCCTACAAAATCCGGTACCCGGACCAAGTCCACCTACTCCGAGGCAACCACGAGGACGCCAAGATCAACC GGATATACGGGTTCTACGACGAGTGCAAACGAAGGTTCAACGTCAGGCTATGGAAGATATTCACAGACTGTTTCAACTCCTTACCGGTCTCGGCCCTCAT CGACGAGAAGATACTCTGTATGCACGGAGGCCTCTCCCCCGACTTGGAGAGTTTGGATCAGATAAGAGAGATCCAAAGGCCTACCGAGGTCCCAGACGCT GGCCTCCTCTGCGATCTTCTCTGGTCCGATCCACACCCCACAAACGAAGGGTGGGGTAATAGCGATCGGGGAGTCTCGAGCACGTTCGGTGCTGATGTGG TCGCGGAGTTTCTTGATAAGGCCGATCTCGATCTCATCTGTAGAGGGCACCAGGTGGTGGAAGACGGGTACGAGTTCTTCGCGGAGAGACGGCTAGTGAC CATATTTTCGGCACCAAACTACGGAGGGGAGTTCGACAACGCCGGAGCGTTGTTGAGTGTGGATGAATCTCTGGTTTGTTCCTTTGAGATATTGAAACCA GCTGCTAACAGTTCAAAGTTCCCACTCAAGAAGGAGGAAGAGAGGAAGAACACACAGTACAAACAACACACCACGAGACCGGGACATGGTCGCGGGACAA ACAGACATTACAGTAGTAGAAGGAACAGGAAGGGTAGTAACTTGTTGCACAAGTCTTAA
AA sequence Show only first row Show all	>Lus10031489 pacid=23156035 polypeptide=Lus10031489 locus=Lus10031489.g ID=Lus10031489.BGIv1.0 annot-version=v1.0 MMTMEGMMEIGAVDDIIRRLLEGKGGGKQVQLSECEIRQLCVNARQIFLSQPTLVEIKAPIRICGDLHGQYQDLLKLFEYGGYPPSANYLFLGDYVDRGK QSLETICLLLAYKIRYPDQVHLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNSLPVSALIDEKILCMHGGLSPDLESLDQIREIQRPTEVPDA GLLCDLLWSDPHPTNEGWGNSDRGVSSTFGADVVAEFLDKADLDLICRGHQVVEDGYEFFAERRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKP AANSSKFPLKKEEERKNTQYKQHTTRPGHGRGTNRHYSSRRNRKGSNLLHKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	0	1
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	1.7	0.9539
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	3.2	0.9396
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	3.5	0.9348
AT1G55200			Protein kinase protein with ad...		Lus10036100 [exp]	4.6	0.9147
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	6.6	0.9100
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10015388 [exp]	7.3	0.9132
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	7.5	0.9214
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	8.4	0.9203
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	8.9	0.9127
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	9.2	0.8909

Compare expression of checked genes

Lus10031489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.