Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05545 187 / 4e-55 RING/U-box superfamily protein (.1) AT2G47700 164 / 4e-47 RFI2 RED AND FAR-RED INSENSITIVE 2, RING/U-box superfamily protein (.1) AT4G13490 89 / 4e-20 RING/U-box superfamily protein (.1) AT2G15260 86 / 3e-18 RING/U-box superfamily protein (.1) AT2G38970 46 / 3e-05 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 42 / 0.0008 Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G15975 41 / 0.0008 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020655 [exp] 293 / 3e-96 AT3G05545 262 / 1e-83 RING/U-box superfamily protein (.1) Lus10029886 [exp] 272 / 8e-88 AT3G05545 258 / 2e-82 RING/U-box superfamily protein (.1) Lus10043027 [exp] 42 / 0.0002 AT4G26400 57 / 3e-10 RING/U-box superfamily protein (.1.2) Lus10033425 [exp] 42 / 0.0003 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015600 [exp] 300 / 1e-98 AT3G05545 291 / 1e-94 RING/U-box superfamily protein (.1) Potri.005G024700 [exp] 275 / 1e-88 AT3G05545 256 / 5e-81 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 42 / 0.0006 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.014G043200 [exp] 40 / 0.0008 AT3G60966 76 / 4e-18 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031491 pacid=23155989 polypeptide=Lus10031491 locus=Lus10031491.g ID=Lus10031491.BGIv1.0 annot-version=v1.0 ATGGGATTGGGTAACAGTGAAAACAATTCGATCGTCGATGACGACGGCGACGGCGTCACCGCCGGCGCCGGAGGAAGTGAAGGGTATGGTAATTGTGCTG TTTCTTGTTCGGTTTGTCTTGAAGCTGTAACGGACGCAGGGGAGCGATCGTGGGCTAAGCTTCAATGCGGGCACCAATTCCATCTCGATTGCATTGGTTC GGCCTTCAATACGAAGGGGGCAATGCAGTGCCCTAACTGTCGGAAAATCGAGAAAGGCCAATGGCTCTTTGGGAGTGGTTCGCGTCCACCGGCCCCTGAG ATCAGCATGGAAGACTGGGCTCTCGATGAGGATGTTTACTACAGCCTCTCCGAAGTGTCTCTTGGAATTCATTACTGCCCATTTGGTGGTGGCTTGGCAA GATACCCGTCATCGTTCGAGGACGGGGAGTTCTCACTGAATGCACATCATGATCATGTTGCTTTTTCTGAACAAGCAGCTGCTGCTGTAACCTCCACAGG CAGCCCTCACGTTGCTTACTTTGGATCATCAATTCGCCCTTCTTCGTCCTCGAGCTCAAGTGCCGTTCTTTCGGATGCTTCGAATTTCAACCCTCACTGG AATCCACCGTCTCTAGTACCTAGCGATATGCAAAGCTCGTACGGCTTCCCTTATCAGAGTTGGGAGCATCAGGCTCCTTCCTTCGCCCCGAATGCTCAAA GAGCGGCACCTAGAACAAATGTCAGGTCTTCTCATAGAGCCGGATCCTTTGTGCAACAACCGTTCCTCATAAACCCGAGTCCCGGTGTTAGAGTTGTACC TCCCCCGGTTACTCCGACTTATCAAGGCAGCAATGCAAGAGCACGAGACCGAGTCCAAGCTCTCCAGGAGTACTATCAACAGCCGCAGCCTGGCACTGCG CCGCAAGATTATGCACCGTTGATCTCAGCAGCTCGGAGACACTTCAACCAAACCAGGGAGCTTTTACAACAAAGTGGACCAATGGCTGCTGCGTCGTCAG CTGATCCGTCTGGATTTTTCTTCACATCACCACAACCATGGACAAGGTTCCCCACACAGGAGCAGCCGCAGCCATGGTTCCCTCTTATGAACAACCAGCA CAGAGAAAGCGGAGGAGATTCCGGTTGGGAGGCCAATGGTTCGGGCAATCCCCGTCGGAGGAATGGTTCGGAGAGGACTTCGCAGAATCGTTTGTAG
AA sequence Show only first row Show all	>Lus10031491 pacid=23155989 polypeptide=Lus10031491 locus=Lus10031491.g ID=Lus10031491.BGIv1.0 annot-version=v1.0 MGLGNSENNSIVDDDGDGVTAGAGGSEGYGNCAVSCSVCLEAVTDAGERSWAKLQCGHQFHLDCIGSAFNTKGAMQCPNCRKIEKGQWLFGSGSRPPAPE ISMEDWALDEDVYYSLSEVSLGIHYCPFGGGLARYPSSFEDGEFSLNAHHDHVAFSEQAAAAVTSTGSPHVAYFGSSIRPSSSSSSSAVLSDASNFNPHW NPPSLVPSDMQSSYGFPYQSWEHQAPSFAPNAQRAAPRTNVRSSHRAGSFVQQPFLINPSPGVRVVPPPVTPTYQGSNARARDRVQALQEYYQQPQPGTA PQDYAPLISAARRHFNQTRELLQQSGPMAAASSADPSGFFFTSPQPWTRFPTQEQPQPWFPLMNNQHRESGGDSGWEANGSGNPRRRNGSERTSQNRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05545			RING/U-box superfamily protein...		Lus10031491 [exp]	0	1
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	6.9	0.8243
AT1G09645			unknown protein		Lus10037343 [exp]	7.2	0.8107
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	8.9	0.7776
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	9.2	0.8009
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	15.2	0.7853
AT3G03210			unknown protein		Lus10020802 [exp]	17.2	0.7354
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10006435 [exp]	21.7	0.7909
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	23.5	0.8023
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	24.9	0.8084
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	25.1	0.7928

Compare expression of checked genes

Lus10031491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.