Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05500 272 / 5e-91 Rubber elongation factor protein (REF) (.1) AT2G47780 181 / 2e-55 Rubber elongation factor protein (REF) (.1) AT1G67360 129 / 3e-35 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) AT1G67130 50 / 2e-06 F-box family protein (.1) AT1G47300 46 / 2e-05 F-box family protein (.1) AT1G33020 46 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT2G19630 44 / 4e-05 F-box and associated interaction domains-containing protein (.1.2) AT5G15660 45 / 5e-05 F-box and associated interaction domains-containing protein (.1) AT4G09190 45 / 7e-05 F-box and associated interaction domains-containing protein (.1) AT4G12560 44 / 0.0001 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015171 [exp] 384 / 3e-135 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10020648 [exp] 326 / 3e-112 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1) Lus10029892 [exp] 325 / 7e-112 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1) Lus10015786 [exp] 128 / 2e-32 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037019 [exp] 124 / 8e-31 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10015170 [exp] 76 / 1e-16 AT5G50220 46 / 2e-06 F-box family protein (.1) Lus10025893 [exp] 75 / 1e-15 AT1G11270 49 / 7e-07 F-box and associated interaction domains-containing protein (.1.2.3) Lus10040338 [exp] 69 / 9e-13 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 69 / 2e-12 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017300 [exp] 312 / 1e-106 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.005G025700 [exp] 308 / 5e-105 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1) Potri.002G206000 [exp] 220 / 7e-71 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.001G055300 [exp] 143 / 6e-41 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 126 / 2e-34 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.006G011400 [exp] 56 / 1e-08 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 51 / 6e-07 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G318400 [exp] 50 / 8e-07 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.006G013200 [exp] 50 / 1e-06 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199601 [exp] 47 / 1e-06 AT3G06240 61 / 2e-12 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05755 [flax] [poplar] REF Rubber elongation factor protein (REF) CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10031493 pacid=23155847 polypeptide=Lus10031493 locus=Lus10031493.g ID=Lus10031493.BGIv1.0 annot-version=v1.0 ATGGCTGAAACAAACGCTAACCCGGCCACTCCTGCTCCACTGACGAGAGAGGAGGAAGAGAGACTGAAGTACTTGCAGTTCGTGCAAGTTGCAGGGGTTC ACGCGCTGGTGACATTCACGAACCTCTACGTCTACGCCAAGGACAAGGCTGGTCCGCTGAAGCCTCGTGTGGAGACCATGGAAGGAAATGTGAAGAGCGT TGTGGGTCCTGTTTATGACAAGTATCAGGATCTCCCGATCGGAGTCCTCAAGTTTGTCGATCGAAAGGTAGATGAATCCGTGACCACTCTGGACAGCCAC GTCCCCACAGTCGTCAAGCAGGTATCATCCCAAGCACTCACAGCAACCCAGGCCGCTCCAGGAGCAGCGCGTGCAGTAGCAACAGAGGTGCAGCGCTCTG GCGTAACGGGGCTGGCAAAAGCCGTGTACACCAAGTACGAGCCCAAGGCGAAGGAGCTTTACACTGCCTACGAGCCTAAAGCGGAGCAATGTGCCGCCTC GGCATGGCGCAGGCTCAACCAGCTCGCGCTCTTCCCTCAGGTGGCTGACGTGGTGGTCCCCACCGCGGCCTACTGGTCAGAGAAGTACAACGACACCGTC TCGAGCACTGCTGAGAAAGGGTACAAGGTGTCTTCCTACTTGCCTCTTGTGCCTACCAAGAGGATTGCTAAGGTGTTTGGTGGTGAGGGTGATCAGATTC CTCAAGACGTCATAGTCGACATTCTGCCTCGACTCGGGACCAAGGATCTCGCGAGGTACAGTCGTGTATCGAAGCAGTGGCTCTCGATGATCGACCACCC TGAATTCATTCGTGGCCAGCTCCATCGTTCTCTTTCCGCAAACTCCAACTCTACTCTTTTCCTCCAAGACAGAAAATTAGACCACACTACGCTACTGGAA ACAGAAGTATGGTGGCGATACCGGCTTCTTCTCCAACCAGATCCCTTGCGATTCCCCGCAAGTGAGGTTGATGGGTTCTTTTCACGGTCTGGTATGCTAT TCTCTTTCCAACTATCCACATGGTTTCGTAGTATTTAA
AA sequence Show only first row Show all	>Lus10031493 pacid=23155847 polypeptide=Lus10031493 locus=Lus10031493.g ID=Lus10031493.BGIv1.0 annot-version=v1.0 MAETNANPATPAPLTREEEERLKYLQFVQVAGVHALVTFTNLYVYAKDKAGPLKPRVETMEGNVKSVVGPVYDKYQDLPIGVLKFVDRKVDESVTTLDSH VPTVVKQVSSQALTATQAAPGAARAVATEVQRSGVTGLAKAVYTKYEPKAKELYTAYEPKAEQCAASAWRRLNQLALFPQVADVVVPTAAYWSEKYNDTV SSTAEKGYKVSSYLPLVPTKRIAKVFGGEGDQIPQDVIVDILPRLGTKDLARYSRVSKQWLSMIDHPEFIRGQLHRSLSANSNSTLFLQDRKLDHTTLLE TEVWWRYRLLLQPDPLRFPASEVDGFFSRSGMLFSFQLSTWFRSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05500			Rubber elongation factor prote...		Lus10031493 [exp]	0	1
AT3G01400			ARM repeat superfamily protein...		Lus10007738 [exp]	1.0	0.9042
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	6.2	0.8864
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	7.2	0.8866
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029601 [exp]	8.5	0.8821
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	13.8	0.8689
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	14.1	0.8670
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	14.4	0.8661
					Lus10022175 [exp]	16.7	0.7823
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	19.6	0.8604
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	20.0	0.8663

Compare expression of checked genes

Lus10031493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.