Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05470 576 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 391 / 6e-123 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 380 / 2e-117 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G54650 366 / 1e-113 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT2G43800 346 / 4e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 311 / 2e-94 AFH3 formin 3 (.1.2) AT1G70140 281 / 3e-83 ATFH8 formin 8 (.1) AT1G59910 268 / 5e-77 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 242 / 1e-68 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 211 / 6e-58 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015175 [exp] 1091 / 0 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10004505 [exp] 645 / 0 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 610 / 0 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 389 / 3e-121 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 386 / 2e-120 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 383 / 3e-118 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 380 / 3e-117 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 376 / 3e-117 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011168 [exp] 339 / 3e-103 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017900 [exp] 657 / 0 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 648 / 0 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 398 / 2e-125 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 393 / 3e-123 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 389 / 2e-121 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 391 / 5e-121 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 383 / 6e-118 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 358 / 7e-110 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 355 / 1e-109 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 355 / 1e-108 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10031496 pacid=23155918 polypeptide=Lus10031496 locus=Lus10031496.g ID=Lus10031496.BGIv1.0 annot-version=v1.0 ATGGGGAAACTCCCCATCATGATTATAATCATCATCACCACCACCATTTTCATCCTCTCATCATCACAGAACGCCCACAAGTTCAGAGCTTTACTTGGTA TCAGCATCAGAAGAAGAATGATACAGAATGAGATCAATCTCTCACCATCACCTTCTCCTTCTCCAAGTTTGGAAAATGACGAGGGTTTAGCTCCATCTCC AGCTGCTGCTCCAATGCTGCCGTTTCACCTGCATTCTCAGTCTCATCATCATCCGTTGCACCATCCAATGGCGATTGTTCAGCCACATATTCAAGAGGAA GATGGAAACTACAAGGGAAGAAGATTCAGAAGGGCTATAGTGGCTGTTACTGCATCTGCTGGAGCTGCATTTGTAGTTTCTGTGATCCTGCTTGTCTGGT TCTATGGCAAGTTCCGAAAGCACCAAAGGGGAACACTGTCGGTGGTTCGCAGTAAGAAATGGAGAATCAGAGGTAAATCCAAGCATCTGACCACCTCCCA TAGTTCAGGAAGCAAGGTAAACTTAAATGTGTATCAGAATCCGTTATTGCTAGGTAGAGACACAGAGCAAAGAAGTTCACCACAATGTGTGCTGGGAGGA GAGACTGAAAATGGTGGTGGTGGGAATAGCTGTGCTGGTAGTTCTTCCACCAGGGAGATCGTTTCTGTACATGGAGATGCAGAGGAATCTGTAAGATATG ATTCTGATGAAGATCAGAACCCTTCTTGTGGTGATAAAATCATCTCCATTGAGCGCCACTCATCATCTGATGATGAATCTTTCCATTCTTTCGCGGATTC ACATTCGTCGAATCATGACAGGCTTTCCAATGCTTCTGCGGCCAGTCTTAGCGAGCTATCCGGGTCGTCTCCTCCATCCGGATTGAATTTAGATACAAAT CTTCCACAGTCTCCATCAGTGGAAAGAGTGGAAGTTTCACTCTTTCCTAAGATAACTTCAGCATTTCCAAATTCCTCTTCAGAGAGGTTGCGTTCTTCAT TACCTCAGAAACCTCTATCTGGAATCCCTCCGCCGCCTGCTTGCCCCCCACCATTTCTGAAGGGAAATAGCAGCTGCAGCAATGGCTCAACGAGGAAAGG CCCTCCGCCACCTCCACCGTCTCAGCTTCTTAAACACACACTATTGGGGAAAGATGGAGCACCATTGCCAAAGCTGAAGCCTCTTCATTGGGATAAAGTC AGAGCACCACCTGAGCAAAGAATGGTATGGGACAAAATAAGATCAAGCTCATTTGAGCTGGATGAAGAGATGATCGAGTCGCTTTTCGGGTACAACTTGA GAAGCACGACCAAGACTGACGAAATGAAGAGCAAAAGCCCTTCTCCAAGCAACCATGTCCTGGACCACAAGAGACTCCAGAACATAACGATTCTTTCGAA AGCCTTGAACTCCACTCCTGATCAAGTTTGCAATTCACTAATGAGAGGGGATGGTCTAGGCTTGCAGCAGCTGGAGGCACTAGCTAGAATGGTGCCAACC GATGAAGAACAGTCCAAGCTGAAAAACTATCAAGGGAACATCAATGATCTTGGTTCAGCTGAGAGATTCGTAAGGACATTACTCACAGTACCGCTAGCTT TCGAAAGAGTCGAAGCAATGCTTTTCAGAGAAACGTTTGATGATGAAGTTGTCCATCTCAGAAACTCCTTCTCAATGCTTGAGGAAGCATGCAAAGAGCT AAGATCAAGCAGGCTATTCCAAAAGCTCCTAGAAGCAGTACTCAAAACAGGCAACCGTATGAACATCGGAACAATCCGAGGCGACGCTCGAGCTTTCAAG CTCGACGCCCTCCTCAAACTCTCCGACGTAAAAGGTACGGACAACAAAACCACACTCCTCCACTTCGTCGTTCAGGAAATTTGTCGAACGGAAGGCGTTC GCGTTTCGGAAAGCATAATGGGGCAGATCAGCCAGAAATCCCAAACAAAAACCCTTGAACAGCGCGAAGAGAATTACCGTCGGATGGGTTTGGACCTCGT CTCCGGCCTAAGTACGGAGCTCTACAACGTCAAGAAGACCGCCACAATCGACCTCGACGTCCTCGCAACATCGGTTTCGAACCTGTCGAATGGGATTTCG AAACTGAACCGTCTGGTGGAGAAGCGACTACTTCCTCCAGATGGCGGGTTCGTCGATTCGATGAGGGAGTTTCTGAGAGACGCGGAGATTGAAGTGAAGG AAGTCAAGGAGGAAGAAGACCGAGTGATGGAGATGGTTAAGGGAGTTACTGAGTACTTCCATGGCAATGTAGGGAGAGATGAAGCGAACCCATTGAGGAT CTTCGTTGTTGTGAGAGATTTCTTAGGGATGCTTGATCATGTCTGTAAAGAACTGAGGAGCTCCAAGGTGGCTAATTGCCAGAATCCTTTGGCGCCATTT CGGTAG
AA sequence Show only first row Show all	>Lus10031496 pacid=23155918 polypeptide=Lus10031496 locus=Lus10031496.g ID=Lus10031496.BGIv1.0 annot-version=v1.0 MGKLPIMIIIIITTTIFILSSSQNAHKFRALLGISIRRRMIQNEINLSPSPSPSPSLENDEGLAPSPAAAPMLPFHLHSQSHHHPLHHPMAIVQPHIQEE DGNYKGRRFRRAIVAVTASAGAAFVVSVILLVWFYGKFRKHQRGTLSVVRSKKWRIRGKSKHLTTSHSSGSKVNLNVYQNPLLLGRDTEQRSSPQCVLGG ETENGGGGNSCAGSSSTREIVSVHGDAEESVRYDSDEDQNPSCGDKIISIERHSSSDDESFHSFADSHSSNHDRLSNASAASLSELSGSSPPSGLNLDTN LPQSPSVERVEVSLFPKITSAFPNSSSERLRSSLPQKPLSGIPPPPACPPPFLKGNSSCSNGSTRKGPPPPPPSQLLKHTLLGKDGAPLPKLKPLHWDKV RAPPEQRMVWDKIRSSSFELDEEMIESLFGYNLRSTTKTDEMKSKSPSPSNHVLDHKRLQNITILSKALNSTPDQVCNSLMRGDGLGLQQLEALARMVPT DEEQSKLKNYQGNINDLGSAERFVRTLLTVPLAFERVEAMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFQKLLEAVLKTGNRMNIGTIRGDARAFK LDALLKLSDVKGTDNKTTLLHFVVQEICRTEGVRVSESIMGQISQKSQTKTLEQREENYRRMGLDLVSGLSTELYNVKKTATIDLDVLATSVSNLSNGIS KLNRLVEKRLLPPDGGFVDSMREFLRDAEIEVKEVKEEEDRVMEMVKGVTEYFHGNVGRDEANPLRIFVVVRDFLGMLDHVCKELRSSKVANCQNPLAPF R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	1.0	0.9765
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	3.7	0.8960
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	8.7	0.9042
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	8.7	0.9123
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	13.4	0.8968
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	13.4	0.9068
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	15.2	0.8868
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	15.7	0.9063
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10006381 [exp]	17.9	0.8672
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	21.2	0.8636

Compare expression of checked genes

Lus10031496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.