Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 56 / 5e-10 F-box/RNI-like superfamily protein (.1) AT1G60400 54 / 2e-09 F-box/RNI-like superfamily protein (.1) AT1G16930 52 / 9e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G13985 51 / 3e-08 FBD1 FBD-associated F-box protein (.1) AT5G56810 50 / 9e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 50 / 9e-08 F-box/RNI-like superfamily protein (.1) AT3G59200 49 / 2e-07 F-box/RNI-like superfamily protein (.1) AT1G66300 47 / 1e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G26922 47 / 1e-06 F-box/RNI-like superfamily protein (.1) AT5G18780 47 / 1e-06 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026190 [exp] 97 / 9e-25 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024701 [exp] 90 / 6e-24 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10023036 [exp] 91 / 5e-23 AT1G16930 66 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10023037 [exp] 91 / 6e-23 AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 91 / 2e-22 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 86 / 9e-21 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 85 / 4e-20 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 82 / 3e-19 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10042331 [exp] 77 / 3e-18 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 61 / 8e-12 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 60 / 3e-11 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G322900 [exp] 50 / 8e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104300 [exp] 46 / 1e-06 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 45 / 3e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 44 / 1e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 43 / 1e-05 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146500 [exp] 42 / 4e-05 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 41 / 9e-05 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 40 / 0.0002 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031499 pacid=23155895 polypeptide=Lus10031499 locus=Lus10031499.g ID=Lus10031499.BGIv1.0 annot-version=v1.0 ATGAACGATGGATCTGAGATTGAGTTGGGAGAAGCTGTGAAAAGGCTTCGGGAGGAAGAAAACAGTACTATTACTACTGTCAATGCTGTTGACAGGTTAA GCAATCCTCCTAACTGCATTCTTTACCACATCCTTCCGTTGCTAGACACCAAAGACGCCGTTCAAACCTCTGTGTTATCCCGAGTGTTGAGGTGCGTATG GAAACATGTCGATGTCGTCAGCGTGCGTCGGAGCAACTTCCAAAACGTTTCGAGTTTCGCAGAGTTTGTCACGAGAGCCTTGTTGCTTCGCTTTGAGCTT GATGTGAGCAGGGTTAGTTTCACCGACGATGTAGGACCGTACGAACAGATTGTTCAGAACACGCTTGACAAGGTCGTACATTACGCATTGAACCATGATT ATCTTAGGTAA
AA sequence Show only first row Show all	>Lus10031499 pacid=23155895 polypeptide=Lus10031499 locus=Lus10031499.g ID=Lus10031499.BGIv1.0 annot-version=v1.0 MNDGSEIELGEAVKRLREEENSTITTVNAVDRLSNPPNCILYHILPLLDTKDAVQTSVLSRVLRCVWKHVDVVSVRRSNFQNVSSFAEFVTRALLLRFEL DVSRVSFTDDVGPYEQIVQNTLDKVVHYALNHDYLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10031499 [exp]	0	1
					Lus10000351 [exp]	4.7	0.8356
					Lus10002886 [exp]	6.6	0.8356
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	8.1	0.8356
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	9.4	0.8356
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Lus10031865 [exp]	10.5	0.8356
					Lus10030838 [exp]	11.4	0.7165
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	11.5	0.8356
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	11.8	0.6791
AT2G46530	ARF	ARF11	auxin response factor 11 (.1.2...		Lus10030240 [exp]	12.4	0.8356
					Lus10014748 [exp]	13.3	0.8356

Compare expression of checked genes

Lus10031499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.