Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 676 / 0 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT4G34120 42 / 0.0007 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015179 [exp] 895 / 0 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 806 / 0 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 800 / 0 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10006516 [exp] 614 / 0 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 414 / 4e-143 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 177 / 1e-52 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020400 [exp] 695 / 0 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 689 / 0 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 600 / 0 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 592 / 0 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 335 / 2e-113 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 265 / 6e-87 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10031501 pacid=23156055 polypeptide=Lus10031501 locus=Lus10031501.g ID=Lus10031501.BGIv1.0 annot-version=v1.0 ATGTTTGCTTCCAGTTCAGATGTTGGCCATGAAGTGGTTCCTATGCGCTTTGTTTGGCCTTATGGAGGAAGAGTGGTGCTTCTCAGTGGCACTTTCACTA GGTGGACTGATCACATAGCCATGTCCCCAATGGAGGGTTGTCCCACGGTGTTTCAAGTCATTTGTAATTTGACCCCTGGATATCACCAGGTTAACTATTA TTTCGTCTCTCCAATGATGGGTTACATCTACTGCTATGAACTTGTGATTATCACCTCCAACTGCAATTTCCTGCCACCGAATTTGTCAAAACCTGCGTTT AGAGGTTTAGGTTGCTTTTCATTCATGTATAAATTTATTGTTGATGGAGAGTGGCGGCATGATGAACACCAGCCATCCGAAAGTGGAAATTTTGGAGTGG TGAATACAGTCTTTTTACCCAGGGAACCGGATGTTGGTCCTTCTAGTCTTAGCCCCGGGGTGCATGGGAGATCGAACATGGAGCTGGATGATGTCTTTGT TCATTCAGATGCTGTCAGCGGGATATCAGATGCTGATTTGGAGGTCTCTCGACATCGAATTTCTGCATTCTTATCAACACATACTGCATATGAGTTGCTC CCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTAAACTACCTGTAAAGCAAGCATTCCATATTCTCCATGACCAGGGTGTACCTGTGGCTCCTCTTTTGG GTTTTTCGAAAGGTCAGTTCGTCGGTGTTCTAAGTGCAATGGATTTCATCCTGATCCTAAAAGAGCTTGGAAATCGTGGATCAACTCTAACAGAAGAGGA GTTGGAAACCCATACTATATCAGCTTGGAAGGAAGGGAAGTTGCATCTTAGCAGACAAATTGATGAAAATGGGAATTCGTATCCTAGACACCTGATCCAT GCTGGGCCTTACGATTCTTTGAAAGATGTTTCTCTAAAAATCTTGCGGGGCAACATCTCCACGATCCCCATTATACATTCTTCGTCTCAAGAGGGTTCAT TTCCGCAGCTGTTACATCTAGCTTCCCTTTCTGGGATACTAAAATGTATATGTAGACACTTCAGGCATTCTACTGGTTCCTTGCCCGTTTTGCAGCAGCC GATTTGTTCAATTCCTTTAGGTTCATGGGTTCCCAAAATCGGGGAATCGAATCCAAGGCCTGTTGCAGTCTTGAGACCCAATGCTTCTCTTGGTGCTGCC CTGTCATTGTTAATTCAGGCTGACGTAAGTTCAATCCCGATTGTAGATGACAACGATTCACTTCTCGATATATATTCGCGAAGCGATATCACCGCATTGG CGAAAGATAAAACCTATACACAGATTCATCTAGACGAAATCAGCATCCATCAGGCATTGCAATTAGGGCAAGATGCAAACTCGACTCACGGAATGTACAA TGGACAGAGATGTCAGATGTGTTTGAGATCTGATCCTCTTCACAAAGTGATGGAGCGGTTATCAACTCCTGGGATTCGGAGACTGTTGATCGTGGAAGCC GGAAGCAAACGTGTGGAAGGGGTCGTCTCGGTGAGCGACGTGTTCAGATTCTTGCTTGGTTAG
AA sequence Show only first row Show all	>Lus10031501 pacid=23156055 polypeptide=Lus10031501 locus=Lus10031501.g ID=Lus10031501.BGIv1.0 annot-version=v1.0 MFASSSDVGHEVVPMRFVWPYGGRVVLLSGTFTRWTDHIAMSPMEGCPTVFQVICNLTPGYHQVNYYFVSPMMGYIYCYELVIITSNCNFLPPNLSKPAF RGLGCFSFMYKFIVDGEWRHDEHQPSESGNFGVVNTVFLPREPDVGPSSLSPGVHGRSNMELDDVFVHSDAVSGISDADLEVSRHRISAFLSTHTAYELL PESGKVVALDVKLPVKQAFHILHDQGVPVAPLLGFSKGQFVGVLSAMDFILILKELGNRGSTLTEEELETHTISAWKEGKLHLSRQIDENGNSYPRHLIH AGPYDSLKDVSLKILRGNISTIPIIHSSSQEGSFPQLLHLASLSGILKCICRHFRHSTGSLPVLQQPICSIPLGSWVPKIGESNPRPVAVLRPNASLGAA LSLLIQADVSSIPIVDDNDSLLDIYSRSDITALAKDKTYTQIHLDEISIHQALQLGQDANSTHGMYNGQRCQMCLRSDPLHKVMERLSTPGIRRLLIVEA GSKRVEGVVSVSDVFRFLLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	2.4	0.8646
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	3.2	0.8604
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	5.5	0.8471
AT5G58720			smr (Small MutS Related) domai...		Lus10018236 [exp]	10.7	0.8294
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	13.0	0.8510
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	13.3	0.8208
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	13.7	0.8276
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	14.3	0.8025
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	18.0	0.8003
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	23.0	0.8053

Compare expression of checked genes

Lus10031501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.