Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55040 356 / 3e-112 zinc finger (Ran-binding) family protein (.1) AT1G70650 154 / 2e-40 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT5G17790 120 / 3e-28 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G48570 111 / 6e-26 zinc finger (Ran-binding) family protein (.1) AT1G53460 62 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015180 [exp] 634 / 0 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 171 / 5e-46 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10003580 [exp] 140 / 1e-36 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 142 / 2e-36 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 120 / 4e-29 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 112 / 3e-25 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 110 / 5e-25 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022300 [exp] 382 / 5e-121 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.005G033000 [exp] 372 / 2e-118 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 182 / 6e-50 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 142 / 2e-36 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 132 / 2e-32 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 124 / 2e-29 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 65 / 3e-11 AT1G53460 254 / 3e-83 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10031502 pacid=23155875 polypeptide=Lus10031502 locus=Lus10031502.g ID=Lus10031502.BGIv1.0 annot-version=v1.0 ATGAGGAGTAGAGAAGAGGATCAGATGGTTGAAAGCTTGGGACTTGGCGGGCTTGAAGCCATGAATGATGGTGTTAGTGTTAATGGGGAGGGTTTAGAGG TTGGTTTTGCTAAAGATTTCAAGACTGTGCAGAATGCCTTTGTCAATTTTGGCAAGGACAGATTTGACATACTGAGGGGCTTGGGGAGAAAGGACATCCA GATCTTGGTTGGCTATGGCTGCCCGACTGCAGATAGGCGGGTCTCTATGTCCGCGAAGCTCTTGAGAAAGCGTGTGCACCTCGACGAAGGCGATGTTTGT AGCAGCTGCAGCTTGAGGAGCTCGTGCGAGAAAGCGTTTCTGACAACAAACAAAGAAGACGAGGCTCGAACTATCGATGTGATGAGGGTTCTCTTAGCTT ATGGCTTCGATCCCGCCACGAACGAATTGGTGACTAACAAGCCTCTCCTTAAGGAGAAGTCGGTCAAAACCGTTGTTCGGAAGTTGCTTCACGAGATTGT GAAGCTGAGTGCAGTTCCCATCGATCCGAACCTCCCTCCTCCTGTGATCAAGAAGTGCGATTTCATGAATTTTGCGAAGAACACGGTGTGTTTACAGTGT GATGCCAAGCGGCCGAAAAGACAGTTGCTTCCTGGAGAATGGGAATGCCCTCAGTGTAACTTCTTGAACTACAGGAGGAACATGGTTTGCTTCCATTGTG ACTGCAAACGTCCTCACGACGAGTTCTTGGAGGACAAAATGGAAGAGAGAAGCCGTGATCATAAGATGAGGTTCGAGAAAGGTTCAGCCCGTCGTCCTGA AGTGTCAAATGCCTGGAACTTTGACTTCGACGATGATGAATCAGATGGCGCAGATGTAGCTGCATTTGAGAATGCAGACTCTGCTGCAAAAGAGTATGAT GAGTCTCCTCCCATGGCTGCTGGTCCAGCTCAGGGTGGACGAAACTTCAGAGACCGTGAAGCTGATGTCAACTGGGGAAGCAGCAGAAATCCAAACAAGT ATTCAGATTCGCAACAAGCTAGTCGATCTGGAACCGGATTTGATGATTTCGATGATGAAGATGATATCGACAGTTATGAGTTGGATTCTCAACCCAGGAC GAACAGTTCTTCGAGACAAGTGTATGAGTTGGAAGGCACTGACTTTCCTGATGATGATGACTTGCCTACTCGTCCGAGTTCAAGTCCCCGTTCAGGTTCT AGACCATCGCGACGAAAGAAGCCTTTCTCTGATGACGACGAGCTTGGTCTGGATTCAGATGAAGAGCTTTCATCGCATTCGAAATGGAAATCCAGCCACA TTGCGCCTGGACATAAAGGTCGAGGTAAGGGTTCTTCAAAAAGACTAAGCTTTGGGTCAGATGATTCTGATGATGATCTTGAGCTTGATTCTGATGATGA TTTGGACGGTCGAAAAATGAAACCCAAAGGAAGGAGCTCGAGTGGGTTTTCGAGGCGAGGTAATGATGACTATATGGATGACAGCGACGATGATGACTAT GGTAGATCATCGAAGCGTAAAGTTGGTGGGAGAAGGGACTTCGATCAATCGCCAAAGCGCGGTAAGGACGGTGGTGGGAGGAGGGATTTGTGGAACGATG ACTTCGACCGTTCAGCTTCTCGTGGTAGAAGCAGCAAAGGAAGTGACGGAGGGTGGAAAACGACTGGTGGAGGAGGAAGAAGAGGCGACGATTTCGACAG GCCTAGAGGTGGAGGAAGAAGAGGTGATGATTTCGACAGGCCTAGAGGCGGAGGAAGAAGAGGCGACGATTTCGACAGGCCTAGAGGTGGCTCCAGACAA GGTGGAGGATTTAAAAGTTCTCAGTTGTCAAGATCAAGGGACTACGGGATGGACAATGGAGGCGATGGTGAATTTAGGAACAAAAGAAGGGTGATTGAAA GGTAG
AA sequence Show only first row Show all	>Lus10031502 pacid=23155875 polypeptide=Lus10031502 locus=Lus10031502.g ID=Lus10031502.BGIv1.0 annot-version=v1.0 MRSREEDQMVESLGLGGLEAMNDGVSVNGEGLEVGFAKDFKTVQNAFVNFGKDRFDILRGLGRKDIQILVGYGCPTADRRVSMSAKLLRKRVHLDEGDVC SSCSLRSSCEKAFLTTNKEDEARTIDVMRVLLAYGFDPATNELVTNKPLLKEKSVKTVVRKLLHEIVKLSAVPIDPNLPPPVIKKCDFMNFAKNTVCLQC DAKRPKRQLLPGEWECPQCNFLNYRRNMVCFHCDCKRPHDEFLEDKMEERSRDHKMRFEKGSARRPEVSNAWNFDFDDDESDGADVAAFENADSAAKEYD ESPPMAAGPAQGGRNFRDREADVNWGSSRNPNKYSDSQQASRSGTGFDDFDDEDDIDSYELDSQPRTNSSSRQVYELEGTDFPDDDDLPTRPSSSPRSGS RPSRRKKPFSDDDELGLDSDEELSSHSKWKSSHIAPGHKGRGKGSSKRLSFGSDDSDDDLELDSDDDLDGRKMKPKGRSSSGFSRRGNDDYMDDSDDDDY GRSSKRKVGGRRDFDQSPKRGKDGGGRRDLWNDDFDRSASRGRSSKGSDGGWKTTGGGGRRGDDFDRPRGGGRRGDDFDRPRGGGRRGDDFDRPRGGSRQ GGGFKSSQLSRSRDYGMDNGGDGEFRNKRRVIER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	0	1
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10037885 [exp]	2.4	0.7350
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034719 [exp]	4.0	0.6926
AT1G18850			unknown protein		Lus10023616 [exp]	5.7	0.7604
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	8.9	0.7893
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	9.8	0.7347
AT1G55205			unknown protein		Lus10032319 [exp]	14.5	0.7237
AT3G26750			unknown protein		Lus10021459 [exp]	19.4	0.6965
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	19.7	0.6690
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	21.9	0.6746
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	30.0	0.7134

Compare expression of checked genes

Lus10031502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.