Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05340 729 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 394 / 2e-126 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 376 / 9e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 370 / 3e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 370 / 6e-117 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 362 / 2e-115 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 361 / 3e-114 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 362 / 4e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25970 355 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 354 / 3e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018978 [exp] 401 / 5e-127 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 389 / 3e-125 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 384 / 1e-122 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 382 / 2e-122 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004253 [exp] 379 / 2e-120 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 371 / 3e-118 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008967 [exp] 370 / 3e-117 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 363 / 3e-116 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 366 / 7e-116 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021100 [exp] 840 / 0 AT3G05340 860 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 419 / 8e-136 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 408 / 1e-129 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G066100 [exp] 386 / 7e-124 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 387 / 4e-123 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 382 / 3e-122 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 383 / 4e-121 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 375 / 3e-120 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G146800 [exp] 372 / 2e-119 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 372 / 7e-119 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031504 pacid=23156000 polypeptide=Lus10031504 locus=Lus10031504.g ID=Lus10031504.BGIv1.0 annot-version=v1.0 ATGAAATCCAAATGGGTGATTCACAAGCTCAACTCCCACCGGTCTTCTTCTTCTTCACTGACTTCTCTTCTCTCCCCACACAAGACCCAATTTCAGCAAT CCTCTGTTTCAAAAGTTCCTAGCTCGATCCTCAGCGCTATAGATGTAAGCCTCGTGTTGTCTCTCTGCGGGAGAGAATCAAACCTCCACCTAGGGTCTTC AATTCACGCGTCAATGATAAAAACCCAAGATCTATCCAGCCAGTCTCTTGTCATTAATAACTCCCTCCTCTCTATGTACTGTAAGTGCAGAGTTTTGAGC AATGCTGGTAAGGTGTTCGACCAAATGCCGCTGAGAGATACCATATCATGGAACACACTGATTTCCGGGTTGTTAACAGCTGGTGAGTTTGAGGCTGGAT TGGGGTGGTTTAAACAGTTGTTGAATTCTGGTGTATACAAGTTTGACCAAGCGACGTTGACCACAATTTTATCAGCCTGTGATGGAGATGACGAGCTTGG TTGTTATGTCAATAGGATGGTTCATAGTTTGGCATTCTTGAGTGGGTTCGATAAGGATATTAGCGTTGGGAATGCTTTGATAACTTCTTACTTCAAATGC GGGAGCTTTTATTCAGGGAAACTGGTTTTTGACGAGATGGTTGAAAGGAATGTCATCAGCTGGACTGCTGCAGTATCAGGGCTAGCTCAGAACGAAATGT ACGAGGATAGTTTAAGATTGGTAGCGGAAATGCTTCGAGGAGGGTCGATCGAACCAAACTTCTTGACATACTTGAGTGGATTAACGGCGTGTTCCGGCTT ACAAGCTGCGAGAGAAGGGAGTCAGATTCATGGACATGTATGGAAGTTAGGGTTGCAGTCAGAGCTCTGCATCCAGAGTGCTCTAATGGACATGTACTCG AAATGCGGGAATCTCGAAGATGCTTGGCGTGTGTTCGACTCCGCCACCCAGATCGATGAAGTCTCCATGACTGTAATCCTTGTTGGGTTTGCTCAGAACG GGTTCGAAGAGGAATCCGTACAGTTCTTTGTGAAAATGGTGAAAGTTGGTGTTGAAATTGATGCAAACATGGTCTCAGCTGTTCTAGGTGGTGCTTCTTT GAGTCTAGGCGAGCAGATTCACTCAATGGTCGTGAAACGAAGGTTCGATTCGAATGTATTCGTCTGCAACGGACTTATCAACATGTACTCCAAGTGTGGA GATCTTGAAAAATCGAGGAAAGTCTTCAACGATATGCAAACTAAGAACTCTGTGTCATGGAACTCCATGATAGCTGCATTCGCAAGGCATGGCGATTTCT CTACAGCGATGCAGATCTACGACGAGATGAGGAACCCAACAGACGTTACGTTCCTTTCGTTACTCCACGCTTGTTCCCACGGAGGGCTGCTCGAGAAGGG AATGGACCTACTATCTTCGATGACCAAGGTCCACAAGCTCGTTCCAAGGACAGAACACTATGCATGCATAGTCGATATGCTAGCCCGAGCCGGTCTGCTC CAAGAGGCATTAGCATTCATCGAGGGGCTACCAATGGAGCCCGATGTGCTGATATGGCAAGCTTTGCTAGGCGGATGCGCGATCCGTGGTAACGTAGAGA TAGGAGAGCTGGCTGCTGAGGAGTTGTTCAAATGTTCACCTAATGAGCCGGCACCTTACGTTTTACTGGCGAATATTTACTCTTCTAACAATAAGTGGAA GGAGAGGGCTGTGGCTATCAGGAGGATGAAGGAAATTAGGGTTTCGAAAGAGACCGGGATTAGTTGGATCGAGATTGAGAAGAGGGTTCATAGCTTTGTC GTTGAGGATAGAATGCATCCTCAAGGTGAGGAGATTTATAGGAGTTTGATGGAGTTGCTTGGGAATATGGTTGATGAAGGTTATGTTCCTGACAAGAGGT TTGTTCTTCATTATGTTGGTCCTAATGGAAAAGTTGATATGAGAGAATTGTGA
AA sequence Show only first row Show all	>Lus10031504 pacid=23156000 polypeptide=Lus10031504 locus=Lus10031504.g ID=Lus10031504.BGIv1.0 annot-version=v1.0 MKSKWVIHKLNSHRSSSSSLTSLLSPHKTQFQQSSVSKVPSSILSAIDVSLVLSLCGRESNLHLGSSIHASMIKTQDLSSQSLVINNSLLSMYCKCRVLS NAGKVFDQMPLRDTISWNTLISGLLTAGEFEAGLGWFKQLLNSGVYKFDQATLTTILSACDGDDELGCYVNRMVHSLAFLSGFDKDISVGNALITSYFKC GSFYSGKLVFDEMVERNVISWTAAVSGLAQNEMYEDSLRLVAEMLRGGSIEPNFLTYLSGLTACSGLQAAREGSQIHGHVWKLGLQSELCIQSALMDMYS KCGNLEDAWRVFDSATQIDEVSMTVILVGFAQNGFEEESVQFFVKMVKVGVEIDANMVSAVLGGASLSLGEQIHSMVVKRRFDSNVFVCNGLINMYSKCG DLEKSRKVFNDMQTKNSVSWNSMIAAFARHGDFSTAMQIYDEMRNPTDVTFLSLLHACSHGGLLEKGMDLLSSMTKVHKLVPRTEHYACIVDMLARAGLL QEALAFIEGLPMEPDVLIWQALLGGCAIRGNVEIGELAAEELFKCSPNEPAPYVLLANIYSSNNKWKERAVAIRRMKEIRVSKETGISWIEIEKRVHSFV VEDRMHPQGEEIYRSLMELLGNMVDEGYVPDKRFVLHYVGPNGKVDMREL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10031504 [exp]	0	1
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	7.1	0.8369
AT1G66345			Pentatricopeptide repeat (PPR)...		Lus10002294 [exp]	10.7	0.8063
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	18.6	0.7834
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	20.6	0.8129
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10011178 [exp]	20.8	0.8042
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	21.7	0.8261
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	28.0	0.7971
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	29.0	0.8005
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	30.5	0.7964
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	31.6	0.8011

Compare expression of checked genes

Lus10031504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.