Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55020 1203 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 1095 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 689 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 677 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 632 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 586 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015184 [exp] 1681 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10001465 [exp] 1333 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 1262 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10004915 [exp] 1113 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10025857 [exp] 754 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10013151 [exp] 706 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 702 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 699 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10031810 [exp] 659 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G032700 [exp] 1257 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 1255 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032400 [exp] 1248 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 1217 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 1174 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 1173 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032800 [exp] 1172 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.010G089500 [exp] 1148 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 743 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G018200 [exp] 736 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain CL0321 [flax] [poplar] PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10031505 pacid=23155912 polypeptide=Lus10031505 locus=Lus10031505.g ID=Lus10031505.BGIv1.0 annot-version=v1.0 ATGCAGAAAATCATCGACTGCTTGAGTGGCCATGGCAATGGCGCCGAGAAGAAGAGGAAGCAGAAGAAGATCAAGGGAACTGTGGTGCTGATGAAGAAGA ACGTCCTCGATTTCAACGACTTCAACGCTTCGATCCTCGATCGTATCCACGAGCTCCTCGGCCAGCGTGTCTCCCTTCAGCTCATCAGCTCCGTCCATGC CGACCCCAAGAATGGAAACACAGGGAGGCTAGGGAAGGCAGCGTACCTGGAGAACTGGATTCCGACTATAGCTCCATTGACAGCCGGTGAAACATCCTAC ACTGTAACATTTGACTGTGACGAACAAGACGACAATCCAGGAGGGTTCCTGATCAAGAACAACCACCACAATGAGTTCTATCTCAAATCCTTAACCCTCG AGGACATCCCCGGCCATGGCAGGATCCATTTCGTCTGCAACTCGTGGGTTTACCCTGCTAAACGATACCAGAAAGACCGCGTCTTCTTCACCAACAAGAC TTACCTACCTCACGAGACGCCATTGCCACTTGTTAAGTACAGAGAGGAAGAGCTGGTTACCTTGAGAGGCAACGGAGAAGGTGAGCTTCAGGAATGGGAC AGGGTGTATGACTATGCTTTATACAACGATCTCGGAAATCCCGACAGTGATCCGAAGTCTGCTCGACCGACTCTCGGAGGTTCGGTCGAGTACCCTTATC CTCGCAGGGGGAGGACTGGTAGGCCGCCATCAAAATCAGATCCTACGGTAGAGAGCAGGGTGCCGTTACTGATGAGCTTAGACATCTATGTACCAAGGGA TGAGAGATTTGGTCACCTGAAGATGTCTGACTTCCTTCTCAATGGACTGAAAGCGATCGTCCAGTTCGTCAAGCCTGAGCTGGAGGTTCTGTGTGCTGAG AACAAGAACGAATTCGATTCGTTCGAGGAGGCCTTGAAGATCTACGATGGAGGTGTGAAGCTCCCTGGCGGCCCTGCACTTGATAGTCTCTGGAAGAATG TTTCACTGGATATCATCAAGCAGATCTTTCACACTGATGGGGAGAGGATTCTGAAATACCCGTTGCCTGAAGTAATCAAAGAGAGCAAGACCGCATGGAG AACTGATGAAGAATTTGCCAGGGAAATGCTAGCTGGCCTTAACCCTGTTGTCATACGTCTACTTCAGGAGTTTCCTCCTAAGAGCAAGCTGGACCCTAAT GTCTATGGCAATCAGGATAGTTCAGTAACTGAAGAACACATAAAGATTGGCCTAAATGGATTAACCATAGCTGAGGCAATCAAGAACAACAAGCTATTCA TACTGGATCACCATGACACATTGATGCCATACCTGAGGAGGATCAACGAAACCCCTTCGACCAAAACGTACGCAACGAGGACGATTCTATTCTTGCAAGA CGACGACACTCTGAAGCCCCTTGCGATTGAGCTGAGCTTGCCGCATCCTGATGGAGACAAGCTTGGATCCATCAACAAAGTCTACACTCCACCGCTAGCG GATCATCATCAAGAAGGCAGCCTTGAAGATTCCATTTGGCAACTGGCTAAAGCTTATGTAGCAGTCAATGACTCCGGATACCATGAACTCTTCACCCACT GGTTGAACACTCATGCTGTGATCGAGCCGTTCATAATTGCAACAAACAGGCAGCTAAGCGTGCTTCATCCAATCCACAAGCTTCTCCACCCTCATTTTCG GGACACGATGAACATAAACGCGCTTGGGAGACAGATCCTCATCAATGGTGGAGGGCTGGTGGAGGCAACTCTTTACCCTTCGAAGTACTCCATGGAGATG TCTTCTTTCATTTACAAGGACTGGAACTTCACTGAACAAGCTGTCCCTCAGGATCTCAAGAAGAGGGGAATGGCAGTTTTCGACCCAAACTCCAAGCACG GCCTCCGGTTACTCATCAAAGACTACCCTTATGCCGTCGACGGCCTCGACATCTGGTCAGCGATCAGAAATTGGGTCTCAGATTACACATCTCTGTACTA TAAATCCGACGCCGATATTCAACGCGATTCCGAGCTTCAATCATGGTGGGAGGAGCTTGTGGAAATCGGCCATGGTGACAAGAAACATGAAACCTGGTGG CCGAAGATGCAGACTCGATCCGAGCTCATCGAATCCATCACAACAGTGATCTGGATCGCGTCGGCTCTCCATGCATCGACCAATTTCGGACAGTACACAT ACGCCGGATACCTGCCGAACCGACCGACGACCAGCCGCCGGTTCATTCCTGAAGAAGGCAGCCCTGAGTTCGAGGAGCTGAAGACAGATCCTGACAGGGC GTTCCTGAGGACAGTGACGGCGAGGCTTCAGACTCTGATAGGGATCTCGCTGATCGAGCTCCTGTCGACGCATTCTTCCGACGAAGTTTACCTTGGCCAG AGGGAGACGAAGGAGTGGACGGCGGACTCGGAGGCGGTGGCGGCGTTCGAGAGGTTTGGAGATGAGCTGGCCGAGGTGGAGAAGAGGATCGTGGAGAGGA ACGGCCAGGTGAAGCTGAGGAATCGGAATGGCCCGGTGAAGGTACCGTATACTCTGCTTTTCCCGACGAGCGAAGCTGGCCGGACCGGCAAGGGAATTCC GAACAGTACATGTTCAACTGGTCGGACAACTAAGGCAGGCTGGCATGCCTTTGTTGAAGAACCAGTGTTTGTTAATGCAAAGCAATACCATGGCATATTG TCCAGAAAAGCTACATTGTGCTGCCTGCTGAAGATTCATACTTGCTTCATAGTTCAAGTCCGACTTCCATCAAATGGAACTCAGAAATTAATTGTTACGG ACTTAATCGCTGGTTTTCGCGATGCTCTGATATGTTGCTTGCATTTTGGCCTGTGCTTGCGTAGTTCTTGCTGTTCCTTCATCCCTTCTGCACTTGCTTC GTCTTCCTGCTTGCTTCTGTATGCTAGTCAGCTTGTGTCCTCTTAA
AA sequence Show only first row Show all	>Lus10031505 pacid=23155912 polypeptide=Lus10031505 locus=Lus10031505.g ID=Lus10031505.BGIv1.0 annot-version=v1.0 MQKIIDCLSGHGNGAEKKRKQKKIKGTVVLMKKNVLDFNDFNASILDRIHELLGQRVSLQLISSVHADPKNGNTGRLGKAAYLENWIPTIAPLTAGETSY TVTFDCDEQDDNPGGFLIKNNHHNEFYLKSLTLEDIPGHGRIHFVCNSWVYPAKRYQKDRVFFTNKTYLPHETPLPLVKYREEELVTLRGNGEGELQEWD RVYDYALYNDLGNPDSDPKSARPTLGGSVEYPYPRRGRTGRPPSKSDPTVESRVPLLMSLDIYVPRDERFGHLKMSDFLLNGLKAIVQFVKPELEVLCAE NKNEFDSFEEALKIYDGGVKLPGGPALDSLWKNVSLDIIKQIFHTDGERILKYPLPEVIKESKTAWRTDEEFAREMLAGLNPVVIRLLQEFPPKSKLDPN VYGNQDSSVTEEHIKIGLNGLTIAEAIKNNKLFILDHHDTLMPYLRRINETPSTKTYATRTILFLQDDDTLKPLAIELSLPHPDGDKLGSINKVYTPPLA DHHQEGSLEDSIWQLAKAYVAVNDSGYHELFTHWLNTHAVIEPFIIATNRQLSVLHPIHKLLHPHFRDTMNINALGRQILINGGGLVEATLYPSKYSMEM SSFIYKDWNFTEQAVPQDLKKRGMAVFDPNSKHGLRLLIKDYPYAVDGLDIWSAIRNWVSDYTSLYYKSDADIQRDSELQSWWEELVEIGHGDKKHETWW PKMQTRSELIESITTVIWIASALHASTNFGQYTYAGYLPNRPTTSRRFIPEEGSPEFEELKTDPDRAFLRTVTARLQTLIGISLIELLSTHSSDEVYLGQ RETKEWTADSEAVAAFERFGDELAEVEKRIVERNGQVKLRNRNGPVKVPYTLLFPTSEAGRTGKGIPNSTCSTGRTTKAGWHAFVEEPVFVNAKQYHGIL SRKATLCCLLKIHTCFIVQVRLPSNGTQKLIVTDLIAGFRDALICCLHFGLCLRSSCCSFIPSALASSSCLLLYASQLVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	0	1
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	1.7	0.8377
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	2.2	0.8499
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	2.4	0.8456
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10016021 [exp]	3.7	0.7806
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	3.9	0.8246
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	6.9	0.8242
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	6.9	0.8162
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	7.9	0.8006
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	8.8	0.8171
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	10.1	0.7765

Compare expression of checked genes

Lus10031505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.