Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09000 565 / 0 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 508 / 2e-172 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G54960 501 / 1e-170 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G53570 255 / 5e-76 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 259 / 3e-75 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT3G13530 215 / 1e-58 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 213 / 4e-58 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT5G66850 205 / 1e-56 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT4G08500 202 / 2e-56 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 185 / 2e-50 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015185 [exp] 1048 / 0 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10034060 [exp] 499 / 3e-169 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 494 / 8e-167 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10002096 [exp] 253 / 7e-72 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10014976 [exp] 247 / 3e-71 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 244 / 7e-70 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 244 / 2e-69 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 236 / 9e-69 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10024645 [exp] 241 / 1e-68 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022700 [exp] 665 / 0 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G033400 [exp] 638 / 0 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.008G149500 [exp] 554 / 0 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 530 / 0 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.007G106800 [exp] 259 / 4e-77 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 257 / 3e-76 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.001G102900 [exp] 255 / 1e-73 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 248 / 6e-71 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 246 / 3e-70 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 240 / 4e-68 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031506 pacid=23155961 polypeptide=Lus10031506 locus=Lus10031506.g ID=Lus10031506.BGIv1.0 annot-version=v1.0 ATGCAAGACTTCATCGGATCAGTTAGGCGATCGTTCGTCTTCCGTCCAGAATCCGAAGGAAGCAGCAACAGCACCCACTCGGTACTCAGTCCTCCTCATC ATCCACTGGTGGACAAGATCAATTCCTGCATTCGCAAGTCCAGAATCTTCACTAAACCCTCGCCTTCTTCCCTCACCGCGCCTCCTCTGATCCGGTACCG GAAAGGAGAGTTGATCGGGTGCGGTGCTTTCGGCCATGTGTATATGGGCATGAACCTCGACTCTGGAGAGCTCCTCGCTATCAAGCAGGTTCTGATTCCG GCTAATGGTGTTACTAAGGAGAAAGCACAGGCTCATGTGAAGGAGCTTGAGGAAGAAGTGAAGCTCTTGAAGAATCTTTCACATTCCAATATTGTGAGAT ACTTAGGCACCGTTAGGGAGGAGGGGTCACTGAATATTCTGCTCGAGTTTGTTCCTGGAGGATCAATATCGTCCCTTCTAGGAAAATTCGGACCTTTTCC TCAAGCTGTTATTAGAACGTATACTGAGCAATTGTTGCTGGGGTTGGAGTATTTGCATAACAATGGAATAATGCACCGGGACATTAAGGGTGCAAATATT CTTGTAGACAACAAAGGATGCATCAAACTGGCTGATTTTGGTGCATCCAAGCAGGTGGTTGAGCTGGCCACAATATCTGGGGCTAAGTCAATGAAGGGTA CACCGTACTGGATGGCTCCTGAAGTTATTCGTCAGACGGGGCATAGTTTCTCTGCTGATATTTGGAGCGTGGGGTGTACTGTGATTGAGATGGCGACTGG GAAGCCTCCGTGGAGCCAAAAATACGAAGAGGTTGCTGCCCTCTTCCACATAGGTTCAACAAAGTCACATCCAGAAATCCCTGATCATCTCTCAGACGAA GCCAAAGACTTTTTGCTCAAGTGTTTGCAGAAAGAACCACATGTGAGACTAAATGCATCTGAGTTGCTAAAGGTGATTCTTATTTCCATTGTCCTTATTT CTTTGGAGAACATTAAGCTGTCTTCGGAATCTTTGAGACGATTATTGCATTATAATGTGGTGGTTAAGTCCAATCTTTTGTCAGTGCAGCATCCATTTGT TACAGGCGAGCACGGGGTTTCTGATACAACAAGTTTGACCCCACAGTCAAAAGCTACTCACGTAGACATTAGAGAGCCATCAGTATCTGGCTCAGACGAT CTCTGTAATTTAGGGAGTATGAACTACTCCATTAATCTGCAAAACTCAAGTGAAACTCAACATATCTGGAGAGAAAACGATGGAGATAATGATATGTGTC AGGTCGATAGTGATCTTAGTGGAAGTGGGTCAAATAAAATTCCTATCCTGACTTCTGGTCAATTTTACAATAATCAGAATGTCGAGCAAGGGTTTGTTGG CGATCTGATGGGAAAGTTCAACGAGTGTCTCGAACCAGAACAAGGAGTGAGAATATGTAACAAAGAACCAGCTCAGTGCAATAGAACTTTGTCAAGTGAG ATATCATTATCTGAGGACGACGATGAAGTCACTGACTCGAAAATCAAAGCTTTTCTAGATGATAAGGCCTTGGAACTGAAAAAACTACAAACACCTCTCT ACGAAGAATTCTACAATAGCATGATCCCGGCGAGATCTCCAAGTCTTTGTGAGAGCTTGCGCCAAGAAACTCCTTCTCCAAATTACTTGAAGTTGCCCCC TAAAAGCAAGTCACCTAGTGGAGTTTCTGTGGGGATATCCTCCCCAGTAGCAGATGCGGGCTGTACTGAAAGCCCTGGGAGTACTGGCTGTATCACTGAC AATGCAGGCGATGAAGCTTCAAAAGCTGTTTCTTCTCCACAAATTGATGCTCAGTCGGAATCCAGTGGCCCTGGTGTTGGATTTGCAGAGAGACAAAGGA AATGGAAAGAAGAGCTTGCCGAAGAGCTTGAGCGACAGCGAGAGATGAAGAGGCAGGCAGACTCGGCAGCAAAAACATCATCCCCAAAAGATCGAGTTGT GAACAAACAAAGGGAAAAGACCAGGTTCGCGACATCTCCAGCCAAGTAG
AA sequence Show only first row Show all	>Lus10031506 pacid=23155961 polypeptide=Lus10031506 locus=Lus10031506.g ID=Lus10031506.BGIv1.0 annot-version=v1.0 MQDFIGSVRRSFVFRPESEGSSNSTHSVLSPPHHPLVDKINSCIRKSRIFTKPSPSSLTAPPLIRYRKGELIGCGAFGHVYMGMNLDSGELLAIKQVLIP ANGVTKEKAQAHVKELEEEVKLLKNLSHSNIVRYLGTVREEGSLNILLEFVPGGSISSLLGKFGPFPQAVIRTYTEQLLLGLEYLHNNGIMHRDIKGANI LVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVIRQTGHSFSADIWSVGCTVIEMATGKPPWSQKYEEVAALFHIGSTKSHPEIPDHLSDE AKDFLLKCLQKEPHVRLNASELLKVILISIVLISLENIKLSSESLRRLLHYNVVVKSNLLSVQHPFVTGEHGVSDTTSLTPQSKATHVDIREPSVSGSDD LCNLGSMNYSINLQNSSETQHIWRENDGDNDMCQVDSDLSGSGSNKIPILTSGQFYNNQNVEQGFVGDLMGKFNECLEPEQGVRICNKEPAQCNRTLSSE ISLSEDDDEVTDSKIKAFLDDKALELKKLQTPLYEEFYNSMIPARSPSLCESLRQETPSPNYLKLPPKSKSPSGVSVGISSPVADAGCTESPGSTGCITD NAGDEASKAVSSPQIDAQSESSGPGVGFAERQRKWKEELAEELERQREMKRQADSAAKTSSPKDRVVNKQREKTRFATSPAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	1.4	0.8055
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	6.9	0.7917
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	7.0	0.6961
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	7.5	0.8099
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	10.1	0.7407
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	10.7	0.7852
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	11.2	0.7333
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10015185 [exp]	17.2	0.7753
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	21.2	0.7494
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	22.1	0.7891

Compare expression of checked genes

Lus10031506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.