Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54940 496 / 5e-171 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G08990 483 / 1e-165 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT4G33330 432 / 3e-145 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT3G18660 385 / 2e-126 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 377 / 6e-124 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT5G18480 115 / 3e-27 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT4G26250 89 / 6e-19 ATGOLS6 galactinol synthase 6 (.1) AT1G60470 86 / 3e-18 ATGOLS4 galactinol synthase 4 (.1) AT1G60450 85 / 1e-17 ATGOLS7 galactinol synthase 7 (.1) AT5G23790 80 / 5e-16 ATGOLS5 galactinol synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029932 [exp] 658 / 0 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10021731 [exp] 439 / 9e-148 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 434 / 5e-146 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10020890 [exp] 396 / 6e-131 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 381 / 2e-124 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 372 / 4e-121 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 321 / 2e-102 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10027949 [exp] 101 / 1e-22 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 93 / 3e-21 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022900 [exp] 579 / 0 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 566 / 0 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.014G029900 [exp] 450 / 1e-152 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.007G107200 [exp] 389 / 4e-128 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 388 / 1e-127 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 382 / 2e-125 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.013G049100 [exp] 105 / 8e-24 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.008G189400 [exp] 82 / 1e-16 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G150400 [exp] 81 / 2e-16 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 79 / 1e-15 AT2G47180 507 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10031507 pacid=23155889 polypeptide=Lus10031507 locus=Lus10031507.g ID=Lus10031507.BGIv1.0 annot-version=v1.0 ATGGGTTTCTCAAGAAATGTTCATCACTCTTCTTCTTCTTCCTCCTCTTCCCACCAAAGGGTCTTTGTAGCCTTCCTCTGTTCCCTCTCCCTCATCTTGA TCTTCCTTGTCCTCAATTTTCGTCCTAGATTGTCCGTTCGATCCACTGATTCGTCTCGGAACCTCCTTGTAGACCCACGGTCGTCTAATCACAGAGGCGC GTGGCTACATGACCACCTACGATCCATGATAAGAAATGACGTTGTGGGAACAGTTATGAGTACTTCCCCCAATAATCGCGGTGGTAAGACCAGGATCGGA TTGGTCAACGTGGAGGACAGCGTGAAGCGGTCCTACGAAGCCCTCAGCTCTGTAGAAACCGTTAGCGTTGACTTTCAGCGAGTGTCTTCCAAGCTGACTT GGAAGGACCTTTTCCCCACTTGGGTGGACGAGGAATATGGGAGTCGGTGTCCGGAGATCCCAATGCCACGATTCGATGTGTCCATGTACCGGGACTTGGA CGTGGTGGTTGTTGGGGTTCCTTGCGGAGGAAGTAATGGCGTATTGAGTAACGGGAGCGAAGGGATTAGGGATGTGTTTAGGTTGCAAGTCAACTTGGTG GCGGCCAATCTCGTGGTGGCGAATGGGGACCGGACAGTGTATGTTGTTTTCATCGGGTCGTGTGGCCCGATGCCCGAGGTTTTTCGGTGTGACGACATGT TGACTCATGTAGGTGACTATTGGGTGTACAAACCTAATGTGGTTAGGCTGAAACAGAAGGTGTCAATGCCAGTTGGGTCGTGCCAAATTGGCTCTCCTTT TGGAAAAACAGGGAATGAAGGATGGAGATCACATTCCCATGGCCAAAAGCAAGCCTATGTAACGGTCCTTCACTCTTCCGAGTCTTACGTATGTGGCGCG ATCGCATTGGCTCAGAGTATCAAACTAACCAACTCAACTCGAGACTTAGTCCTCCTCCACGACTCCTCCATCACTCCTTCATCCCTTGCTGGGCTCCGCC AAGCCGGTTGGACCACTCGGCCCATCCAGCCTATAAGGAGCACCTTCGCCGAGAAGGGCTCCTATAACGAGTGGAACTACAGCAAGCTCCGGATTTGGCA GCTCCCCGACTACGACAAGGTGGTATTCATCGACTCAGACCTCCTGATCTTACGAAACATGGACGAAATCTTCGGCTACCCACAACTCTCGGCATCTGCC AACGATAAATACTTGTTCAACTCGGGCATCATGGTCATCGAGCCCTCGAGCTGCATGTTCGAGGATCTGATGGCCAAGACTGCCCTGGTCTCCTCCTATA ACGGAGGGGACCAGGGCTTCCTCAACGAGGCATTCACATGGTGGCACCGCCTCCCAAGGAAGGTAAACTGGCTGAAAGTCGTCGAAGGTGATGTTAAGAA GGAAGACAAGAGACGGGAACCCACGGAGGGGGTTTATGGGGTGCATTTCTTAGGGTTTAAGCCGTGGATGTGCTATAGGGACTACGACTGCAATTGGGAT GTAACGGATCATCACATATTTGCGAGCGATGTGGCCCATCGGAAGTGGTGGGAAGTGTATGATGTCATGCCTAAGAGGTTGCAAAGGTATTGTGGGTTGA CTAGGAAGGTGAATGATAGGATTAGGAAGTTTGGGAAATTCAAGAATCGAAGGTTGAGAATTCGAGTTAAGGATTCAAGAAAACATCATTTGTAA
AA sequence Show only first row Show all	>Lus10031507 pacid=23155889 polypeptide=Lus10031507 locus=Lus10031507.g ID=Lus10031507.BGIv1.0 annot-version=v1.0 MGFSRNVHHSSSSSSSSHQRVFVAFLCSLSLILIFLVLNFRPRLSVRSTDSSRNLLVDPRSSNHRGAWLHDHLRSMIRNDVVGTVMSTSPNNRGGKTRIG LVNVEDSVKRSYEALSSVETVSVDFQRVSSKLTWKDLFPTWVDEEYGSRCPEIPMPRFDVSMYRDLDVVVVGVPCGGSNGVLSNGSEGIRDVFRLQVNLV AANLVVANGDRTVYVVFIGSCGPMPEVFRCDDMLTHVGDYWVYKPNVVRLKQKVSMPVGSCQIGSPFGKTGNEGWRSHSHGQKQAYVTVLHSSESYVCGA IALAQSIKLTNSTRDLVLLHDSSITPSSLAGLRQAGWTTRPIQPIRSTFAEKGSYNEWNYSKLRIWQLPDYDKVVFIDSDLLILRNMDEIFGYPQLSASA NDKYLFNSGIMVIEPSSCMFEDLMAKTALVSSYNGGDQGFLNEAFTWWHRLPRKVNWLKVVEGDVKKEDKRREPTEGVYGVHFLGFKPWMCYRDYDCNWD VTDHHIFASDVAHRKWWEVYDVMPKRLQRYCGLTRKVNDRIRKFGKFKNRRLRIRVKDSRKHHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10031507 [exp]	0	1
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	1.0	0.8632
AT3G09925			Pollen Ole e 1 allergen and ex...		Lus10023887 [exp]	4.8	0.7333
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	7.3	0.8236
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	7.7	0.8428
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	8.5	0.8233
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	9.7	0.8146
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	10.1	0.8044
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	10.9	0.8026
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	11.8	0.7339
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	12.0	0.8011

Compare expression of checked genes

Lus10031507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.