Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33730 807 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28180 523 / 6e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 238 / 4e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G20920 235 / 2e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 232 / 8e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 219 / 4e-64 DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 228 / 5e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 213 / 8e-61 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G01540 207 / 1e-58 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G58570 206 / 5e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015187 [exp] 911 / 0 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037527 [exp] 234 / 5e-67 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 227 / 6e-66 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 226 / 2e-65 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011466 [exp] 233 / 3e-65 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 220 / 3e-64 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 219 / 5e-64 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10035327 [exp] 222 / 6e-62 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029337 [exp] 211 / 4e-61 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037200 [exp] 839 / 0 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G045800 [exp] 833 / 0 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 245 / 4e-71 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 227 / 7e-67 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G003600 [exp] 231 / 5e-65 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 228 / 1e-63 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 220 / 2e-63 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 218 / 2e-62 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 213 / 2e-60 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 210 / 1e-59 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10031509 pacid=23155920 polypeptide=Lus10031509 locus=Lus10031509.g ID=Lus10031509.BGIv1.0 annot-version=v1.0 ATGGAGAACGGAAAGAAGAAGCCAGTCTTCCTATCCAAAGCTGAGCGCGAGAAGCTCGCCATCCAACGCCGGCAAGAGGAGAACGAGCTTCAGAAGAAGC GGCAGGAGCAGCTCCTCGCGCAAGCGAACACTCTGAAACCCACCTCTGCCGCGGACTCCGAACGCCGCGGCGACCGCGACCGGGATCGAGACGTTGATCG GGAGCGCGACAGGGCCAGAGAACGAGATAGGGATCGCGACCGAGACTACAGAGATAGGGATCGCGATCGTGACAGAGATAGAGAGCGAGAGAGGGAGAGA GAAAGAGAGCGAGAGAGAGGGCGGCGGGAGAGGGAGAGAGAGCGCGAGGAGGAAGCTAAGGCGAGGGAGAGAGCTCGATTGGATAAGCTGGCTGAGCGGG AGCGGGAGAAGGAGCTGGATTTGATTAAAGATCAGTACCTAGGATCGAAGAAGCCGAAGAAGAGAGTGATTAAGCCGAGCGAGAAGTTCCGATTCTCGTT CGATTGGGAGAACACTGAGGACACTTCACGGGACATGAATGCTCTGTACCAAACCCCTCACGAGGCGCAGTTGCTCTTTGGGCGAGGGTTTCGAGCCGGG ATTGATCGGAGGGAGCAGAAGAAGCTGGCGGCTAAGAACGAGAAGGAGATGAGGGATGAGATCCGTAAGAAGGATGGAATTGAAGAGAGGCCTGAGGAGG CAGCTGCTCAGAGGATGAAGGAAGAAGCTGCTGAGATGTATGATACGTTTGACATGAGAGTTGATAGGCATTGGTCTGATAAGAAGCTGGAGGAGATGAC TGAGAGGGATTGGAGGATATTCAGGGAGGATTTCAACATCTCTTACAAGGGGTCGAAGATTCCTCGGCCGATGAGGAGTTGGATGGAGAGTATGCTGACT CCTGAGCTACTGAAAGCTGTGGAGAGAGCTGGTTACAAGAAGCCATCTCCGATTCAGATGGCAGCAATCCCACTGGGTTTACAGCAGCGTGACGTTATTG GAATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTGCCTATGTTGACTTACATATCTAGGTTGCCTCCCATGAGCGAGGAGAATGAAGCTGA GGGGCCTTATGCTGTAGTTATGGCACCCACTAGGGAATTAGCACAGCAGATTGAGGAAGAGACTGTTAAGTTTGCACATTACTTGGGTATTAATGTTGTC TCGATTGTCGGTGGGCAGTCGATTGAGGAGCAAGGGCTTAAGATTAGGCAAGGGTGCGAAGTAGTTATCGCAACTCCCGGTCGTTTAATCGATTGTTTGG AGAGGCGTTATGCTGTGTTAAATCAGTGCAATTATGTTGTTCTCGACGAGGCTGATCGAATGATCGATATGGGGTTTGAGCCGCAAGTGGTAGGTGTACT AGATGCAATGCCTTCGAGCAATTTGAAACCGGAGAACGAAGATGAGGAGCTTGATTCGAAGAAGATTTACCGTACCACTTATATGTTTAGTGCCACCATG CCTCTAGCAGTCGAGCGGCTTGCTAGGAAGTACCTTCGAAACCCTGTAGTTGTCACAATTGGTACTGCCGGAAAGGCAACCGAGTTGATCTCCCAGCATG TGATGATGGTGAAAGAATCAGAGAAGAACTCCAGGCTACAGAGGCTGCTGGACGAGCTTTCGGACAGGACAGCAATCGTGTTTGTAAACACGAAAAAGAC TGCAGATTTCCTCGCCAAGAATCTGGACAAGAACGGGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTGTGTGGTTTAA
AA sequence Show only first row Show all	>Lus10031509 pacid=23155920 polypeptide=Lus10031509 locus=Lus10031509.g ID=Lus10031509.BGIv1.0 annot-version=v1.0 MENGKKKPVFLSKAEREKLAIQRRQEENELQKKRQEQLLAQANTLKPTSAADSERRGDRDRDRDVDRERDRARERDRDRDRDYRDRDRDRDRDRERERER ERERERGRREREREREEEAKARERARLDKLAEREREKELDLIKDQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQTPHEAQLLFGRGFRAG IDRREQKKLAAKNEKEMRDEIRKKDGIEERPEEAAAQRMKEEAAEMYDTFDMRVDRHWSDKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWMESMLT PELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGINVV SIVGGQSIEEQGLKIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDSKKIYRTTYMFSATM PLAVERLARKYLRNPVVVTIGTAGKATELISQHVMMVKESEKNSRLQRLLDELSDRTAIVFVNTKKTADFLAKNLDKNGYXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXFCVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	0	1
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	2.4	0.8793
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	2.4	0.8908
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	2.8	0.8771
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019764 [exp]	4.2	0.8624
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	6.2	0.8780
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	9.9	0.8499
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	12.1	0.8404
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	13.9	0.8047
AT1G75140			unknown protein		Lus10010815 [exp]	14.7	0.8269
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	16.6	0.8710

Compare expression of checked genes

Lus10031509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.