Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05290 426 / 1e-150 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 420 / 2e-148 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT2G39970 82 / 2e-17 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT1G25380 59 / 8e-10 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT4G32400 48 / 6e-06 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT1G34065 45 / 3e-05 SAMC2 S-adenosylmethionine carrier 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015188 [exp] 562 / 0 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10010517 [exp] 393 / 1e-137 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1) Lus10034055 [exp] 378 / 1e-131 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10014839 [exp] 88 / 2e-19 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 85 / 1e-18 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 59 / 6e-10 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10034104 [exp] 54 / 7e-08 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 45 / 3e-05 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10016417 [exp] 45 / 4e-05 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033800 [exp] 461 / 1e-164 AT3G05290 433 / 1e-153 peroxisomal adenine nucleotide carrier 1 (.1) Potri.013G023200 [exp] 452 / 2e-161 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1) Potri.010G092100 [exp] 404 / 2e-142 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.010G192600 [exp] 89 / 8e-20 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 74 / 1e-14 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 71 / 2e-13 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 66 / 6e-12 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 55 / 2e-08 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.014G125600 [exp] 55 / 3e-08 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.005G189600 [exp] 51 / 6e-07 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10031510 pacid=23155862 polypeptide=Lus10031510 locus=Lus10031510.g ID=Lus10031510.BGIv1.0 annot-version=v1.0 ATGGGCGGCGGGGTTGATCTGGAATCTATAGCCGAGGCCACCTCTGGAGCGGTAGGATCGCTGCTTAGCACCACCATACTGTACCCGCTTGACACCTGTA AGACCAAGTACCAAGCTGAAGCTCGCTCCCATGGCCACCGCAAATACAGGCATCTATCAGATGTATTATGGGAAGCAATATCAAACGGCCAGTACCTGTC ACTATACCAAGGCTTAACGACGAAGAATCTCCAGTCCTTTGTTTCGCAGTTTGTCTACTTCTACGGCTACAGCTACTTCAAAAGGCTGTACCTGGAGAAG AGCGGTTCCAAGAAGATTGGAACCAAGGCGAACTTGCTCGTTGCAGCTGCTGCAGGGGCGTGCACAGCCATTGCCACACAGCCATTAGACACGGCCTCCT CGAGGATGCAGACGAGCGCGTTTGGCAAATCGAAAGGGCTGTGGGAGACTCTGACAGAAGGCGAGTGGACCAACGCTTTCGATGGCCTCGGTATCTCTCT TTTGCTAACCTCAAACCCTACCATTCAGTATACAGTGTTTGATCAGCTGAAACAAAAGCTTCTAAAGGGGAATCAAGCAGAAACCCTTTCTGCATCCACC GCCTTTCTTCTCGGTGCATTGTCAAAGAGTATCGCAACATTCTTAACATACCCTGCTATCAGGTGTAAGGTGATGATTCAAGCAGCAGACACCGACGAGG CTGACCACAACGAGGACTCTACGAAAAGGAAACCCAAACGCAGACCGAGCAAAACGCTGTCCGGTGTAGTGGCTTCGGTCTGGAAGCAGGAAGGAGTTTC GGGGTTCTTCAAGGGCTTAAAAGCTCAGATCTTGAAGACAGTACTGAGCTCAGCTTTGCTTCTGATGATCAAGGAGAAGATCACTGCAACTACTTGGGTC CTTATACTTGCAGTCCGAAGGTCTCTTTTGGTTTCGACAGGTAGACTAAAGAATGCTTGA
AA sequence Show only first row Show all	>Lus10031510 pacid=23155862 polypeptide=Lus10031510 locus=Lus10031510.g ID=Lus10031510.BGIv1.0 annot-version=v1.0 MGGGVDLESIAEATSGAVGSLLSTTILYPLDTCKTKYQAEARSHGHRKYRHLSDVLWEAISNGQYLSLYQGLTTKNLQSFVSQFVYFYGYSYFKRLYLEK SGSKKIGTKANLLVAAAAGACTAIATQPLDTASSRMQTSAFGKSKGLWETLTEGEWTNAFDGLGISLLLTSNPTIQYTVFDQLKQKLLKGNQAETLSAST AFLLGALSKSIATFLTYPAIRCKVMIQAADTDEADHNEDSTKRKPKRRPSKTLSGVVASVWKQEGVSGFFKGLKAQILKTVLSSALLLMIKEKITATTWV LILAVRRSLLVSTGRLKNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	1.0	0.9728
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	1.7	0.9616
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	2.0	0.9642
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	3.5	0.9540
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	4.5	0.9530
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	4.6	0.9505
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	5.7	0.9460
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	6.9	0.9460
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	7.3	0.9526
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	9.3	0.9323

Compare expression of checked genes

Lus10031510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.