Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1) AT3G05280 435 / 1e-155 Integral membrane Yip1 family protein (.1) AT2G39805 174 / 3e-53 Integral membrane Yip1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015189 [exp] 563 / 0 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) Lus10029935 [exp] 520 / 0 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10004473 [exp] 519 / 0 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10004695 [exp] 150 / 4e-44 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10001020 [exp] 140 / 9e-40 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10030159 [exp] 111 / 7e-29 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033900 [exp] 469 / 5e-169 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 449 / 5e-161 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1) Potri.010G198300 [exp] 176 / 1e-53 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2) Potri.008G060300 [exp] 175 / 1e-53 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10031511 pacid=23156041 polypeptide=Lus10031511 locus=Lus10031511.g ID=Lus10031511.BGIv1.0 annot-version=v1.0 ATGTCCGGTAACTATACGCCGATCGACAATCAGAAGGTCTCCGGATCTGTGCCTGCGGTTACCGATCAAGGCCATATTCCAGTCCAGTTCGCAGAGTCGA ATCTGCAAACGTTTCCGCCTTCTGTCGCTCAGGGAAAGATCAGTGGTGGATCCAGGCCTCCTCGTGATGCTGACGATTCCTTTTCAAAACCCATCAATGG TTCTACTGATGTACCCCAGCAGCAAGGCGGCTGGCTACGAGCGTTCTCAGTTGCTGCTTACAAGCCATACTTTGATGTCGATACCATAGATGTTCTAGAG CGGATCAAAGATTCACTTCTCCCATTCAATGGCGGCTTCACTGAGAAAACTGCTGAAAAGCCAGACTTGTACGGACCGTTCTGGATATGCACCACCCTAA TCTTCGTAGCAGCTTCGATAAGCACAATCGTGGCATATGTAGCACACAAGGTTCAAAAGAAAGAATGGAACTACGACATCAATGTCGTGACATGGTCCGC TGGCTTGTTCTACGGATACGTAACACTCGTTCCCCTCGTTCTGTACGTCATCCTCAAGTACTTCTCAACACCATCAGGACTTGTGCAGCTATTTTGTCTC TATGGCTACTCCCTATTCATCTTCATCCCAACACTGTGTCTCTCCGTCGTACCCTTGGAGATCTTCAGGTGGGTAGTTGCAGGCGTCGCAGGGTTCATGT CAGCATCCTTCGTTGCGTTGAACCTTCGAGCCCATATCTTGTCTGCAGGCGAGAGGTGGGTGTTGATCGTCGCTGGCATATTCCTGCTGCAGCTCGGGTT ATCTGTCGTGTTGAAGATGTACCTCTTCACCATTACTGTATAA
AA sequence Show only first row Show all	>Lus10031511 pacid=23156041 polypeptide=Lus10031511 locus=Lus10031511.g ID=Lus10031511.BGIv1.0 annot-version=v1.0 MSGNYTPIDNQKVSGSVPAVTDQGHIPVQFAESNLQTFPPSVAQGKISGGSRPPRDADDSFSKPINGSTDVPQQQGGWLRAFSVAAYKPYFDVDTIDVLE RIKDSLLPFNGGFTEKTAEKPDLYGPFWICTTLIFVAASISTIVAYVAHKVQKKEWNYDINVVTWSAGLFYGYVTLVPLVLYVILKYFSTPSGLVQLFCL YGYSLFIFIPTLCLSVVPLEIFRWVVAGVAGFMSASFVALNLRAHILSAGERWVLIVAGIFLLQLGLSVVLKMYLFTITV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	2.8	0.8685
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	2.8	0.8708
AT4G21215			unknown protein		Lus10006757 [exp]	3.2	0.8617
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	6.5	0.8633
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	8.4	0.8531
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	10.6	0.8478
AT5G47540			Mo25 family protein (.1)		Lus10039045 [exp]	11.0	0.8087
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	11.3	0.8626
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	14.1	0.8580
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	14.4	0.8270

Compare expression of checked genes

Lus10031511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.