Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 91 / 9e-20 F-box family protein (.1) AT3G16210 90 / 9e-20 F-box family protein (.1) AT4G12560 86 / 2e-18 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) AT4G22390 76 / 5e-15 F-box associated ubiquitination effector family protein (.1) AT1G71320 63 / 1e-10 F-box family protein (.1) AT4G38870 62 / 3e-10 F-box and associated interaction domains-containing protein (.1) AT1G47790 57 / 8e-09 F-box and associated interaction domains-containing protein (.1) AT3G52320 52 / 4e-07 F-box and associated interaction domains-containing protein (.1) AT3G10240 51 / 9e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010910 [exp] 360 / 8e-123 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10040463 [exp] 327 / 2e-109 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 315 / 3e-104 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 315 / 3e-104 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 315 / 3e-104 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10043335 [exp] 259 / 6e-85 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10015169 [exp] 209 / 4e-61 AT5G64330 264 / 7e-79 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10040338 [exp] 162 / 8e-46 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027028 [exp] 155 / 1e-45 AT4G12560 54 / 7e-09 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013000 [exp] 121 / 1e-30 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 119 / 6e-30 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 119 / 8e-30 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 105 / 8e-25 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 101 / 2e-23 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 101 / 2e-23 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G224200 [exp] 77 / 2e-15 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.001G129200 [exp] 76 / 6e-15 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 76 / 7e-15 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G121200 [exp] 76 / 9e-15 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10031512 pacid=23155990 polypeptide=Lus10031512 locus=Lus10031512.g ID=Lus10031512.BGIv1.0 annot-version=v1.0 ATGGCAGATCTCTTTCCACAAGAAATCATGGTCGAAATTCTACAACGACTCAGGGTGAAGGATCTCGTGTGCTACAGGTGCGTATCGAAGCAGTGGTTGT CGATAATTGACGACCCTTACTTCATCCGTAGCCAACACCGTCATTCCCTTTCGACATATTCCAACTCTGCCCTTTTCCTCCAAGACAGAAAATCGACTAG AGTACTCTACTGGAGACTACAGAGGAATGCTATTGCTAACGCTAGCGATGATATCAACAATAGCTTCTTATCCTCCGAACCGGTATATTACGAGCCCACG GAAACCGGAAAACTGCAGTTGATGGGCTCTAGTCACGGTCTTGTATGCTTTTCCCTTTGCAACCGTCCACATCCGGATTTCCTCATAGTTAACCCATCAA CAGGGGAGCGGCACACACTTACGAATCCGATATCGGACCCTTCGTTATCGGACCCTCCATTATCGGACCGTCCATTAAGGATTAGGAAAAGTAAAATAGC AGTTACTAATTATAAACTGAAAGCTTATGGTTTCGGGTACGACGAGTTATCAGACGATTACAAGGTGGTCAGGATTTTACAAAGGTCTTATAATTCCTAC ATTGCTGAAATTTACGGGCTCAGGTCCAAGGGTTTCGTCAGGACGATTCCTTTGCCCAATGCAGACTGGAATTACTTCAATAACAAATTCACGGGGGTGT TTATAGGCGGCTCGTTGCATTGGTGCACCTGGAACCCTGTTCGTCAACCAGTGATTCACGCGATCGATCTTGTGTCCAACACCTATCGCCAGCTGGACAT GCCCGAATACAGCTTTGGCCGGAGTTGCAGTCTGAATGTGGGCATTGTAGGCCGGAGCTTGTGTGTCTGTGGTTACTTTAAGCGTGAGAGGAAAATGGGC ATCTGGGTTATGGAAGAGTACGGGAATCCCGAATCGTGGAAGATGATTTGCTCTTTCAAGAATGTTATCGAGTGGTGGTGGGATCGTTCCTCTGTAACCT CTGTGGGGAATGATGGAGATAAGATTCTTCTGATGGTTAATTGGTGTCGATTCATTTGGTACGATCCAACGACTGCGGACGAGACTGGTATCTCTAAGGT TTGTAAGGACTTGGGACGTGAACCGCATGAAGCTATGTTTTGTTCGGATAGTCTCGTGAAGATATTTCCAAATGTTATGAAGAAATTTTCTTAG
AA sequence Show only first row Show all	>Lus10031512 pacid=23155990 polypeptide=Lus10031512 locus=Lus10031512.g ID=Lus10031512.BGIv1.0 annot-version=v1.0 MADLFPQEIMVEILQRLRVKDLVCYRCVSKQWLSIIDDPYFIRSQHRHSLSTYSNSALFLQDRKSTRVLYWRLQRNAIANASDDINNSFLSSEPVYYEPT ETGKLQLMGSSHGLVCFSLCNRPHPDFLIVNPSTGERHTLTNPISDPSLSDPPLSDRPLRIRKSKIAVTNYKLKAYGFGYDELSDDYKVVRILQRSYNSY IAEIYGLRSKGFVRTIPLPNADWNYFNNKFTGVFIGGSLHWCTWNPVRQPVIHAIDLVSNTYRQLDMPEYSFGRSCSLNVGIVGRSLCVCGYFKRERKMG IWVMEEYGNPESWKMICSFKNVIEWWWDRSSVTSVGNDGDKILLMVNWCRFIWYDPTTADETGISKVCKDLGREPHEAMFCSDSLVKIFPNVMKKFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16210			F-box family protein (.1)		Lus10031512 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002244 [exp]	7.2	0.7841
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	9.3	0.7994
					Lus10028110 [exp]	10.0	0.7969
					Lus10010253 [exp]	16.0	0.7843
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10040637 [exp]	19.5	0.7276
					Lus10027774 [exp]	23.9	0.7733
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	36.8	0.7719
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	38.7	0.7820
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	41.5	0.7720
AT5G03555			permease, cytosine/purines, ur...		Lus10023889 [exp]	69.1	0.6910

Compare expression of checked genes

Lus10031512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.