Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27450 407 / 3e-141 MVK, MK mevalonate kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015168 [exp] 630 / 0 AT5G27450 513 / 0.0 mevalonate kinase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035300 [exp] 514 / 0 AT5G27450 495 / 5e-176 mevalonate kinase (.1.2.3) Potri.013G024000 [exp] 504 / 1e-179 AT5G27450 484 / 6e-172 mevalonate kinase (.1.2.3) Potri.015G125201 [exp] 61 / 5e-12 AT5G27450 56 / 5e-11 mevalonate kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031513 pacid=23155965 polypeptide=Lus10031513 locus=Lus10031513.g ID=Lus10031513.BGIv1.0 annot-version=v1.0 ATGGAAGTGAAAGCGAGAGCTCCGGGGAAGATCATACTTTCCGGCGAGCACGCGGTGGTTCATGGATCAGCTGCGGTGGCTGCTTCCATTGATCTCTACA CTCACGTCACACTAACTTTCCCTACTTCTCCTGAGCATGAAGACGTGCTGAAATTGCAGCTCAAAGACATGGCACTAGAGTTCTCATGGCCGATTTCGAG GATCAAATTAGCTTTATCCCATTTGGAAGTCCCATTCCCATCAAAACCAACCACATGCTCTTCAGAAACATTGAAGTTAGTTGCAGAATTGGTAGAAGAA CAAAGCATCCCAGAAGCAAAAATCGCTCTTGCCTCGGGAGTGACTGCATTTCTCTGGCTCTATACCTGCATCCAAGGATTTAGACCTGCAACTGTAGTTG TTAGTTCTGAACTTCCGCTAGGTTCGGGCCTTGGTTCATCGGCTTCCTTTTCCGTTGCACTCTCAGCTACTCTCCTAGCATTTTCGGACTCCATTAAGAT GGATTTGAGACGTCCAGGATGGTTTGAATTCGAGGAGCCTCAGCTTGACCAGTTGAACAAATGGGCTTTCGAAGGTGAAAAGATCATTCATGGAAAGCCA TCTGGAATTGACAATACAGTTAGCACATATGGCAACATGATCAAGTTCAAATCTGGTAATCTAACCCGGATCAAGTCCAGCTTGCCGCTCAAAATGCTGA TTACCAACACCCGGATCGGGAGGAACACGAAAGCGTTAGTGGCTGGCGTTTCGGAGAGGAACTTGAGGCATCCTGAAGCCATGAGCTTTGTGTTCAATGC TGTCGACTCCATCAGTAAAGAGCTGGGTAACGTACTCCAGACTCCTGCTCCCGATGAGCTCTCGATAACCGAGAGGGAAGAGAAGCTCGAGGAGTTGATG GAGATGAACCCCGGCTTGCTCCAATGTATGGGAGTCAGCCATTCCTCTATCGAAACCGTTTTGAGAACAACGTTGAAGTACAAACTCGCTTCGAAGTTGA CCGGTGCTGGTGGTGGTGGTTGCGTGCTTACACTCTTGCCTACCCTGCTATCAGGAACAATCATTGACAAGGTCGTTTCGGAGCTCGAAGCCTGCGGATT CCAATGTCTGACTGCTAAGATCGGTGGGCTCGGTGCTGAAATTTGCTTTAATGGTTCATCCTAA
AA sequence Show only first row Show all	>Lus10031513 pacid=23155965 polypeptide=Lus10031513 locus=Lus10031513.g ID=Lus10031513.BGIv1.0 annot-version=v1.0 MEVKARAPGKIILSGEHAVVHGSAAVAASIDLYTHVTLTFPTSPEHEDVLKLQLKDMALEFSWPISRIKLALSHLEVPFPSKPTTCSSETLKLVAELVEE QSIPEAKIALASGVTAFLWLYTCIQGFRPATVVVSSELPLGSGLGSSASFSVALSATLLAFSDSIKMDLRRPGWFEFEEPQLDQLNKWAFEGEKIIHGKP SGIDNTVSTYGNMIKFKSGNLTRIKSSLPLKMLITNTRIGRNTKALVAGVSERNLRHPEAMSFVFNAVDSISKELGNVLQTPAPDELSITEREEKLEELM EMNPGLLQCMGVSHSSIETVLRTTLKYKLASKLTGAGGGGCVLTLLPTLLSGTIIDKVVSELEACGFQCLTAKIGGLGAEICFNGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	0	1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	2.4	0.8471
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	3.0	0.8797
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	3.5	0.8610
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	4.9	0.8766
AT5G17620			unknown protein		Lus10013643 [exp]	7.4	0.8498
AT2G44525			Protein of unknown function (D...		Lus10007556 [exp]	15.6	0.7511
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	16.9	0.8521
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10030352 [exp]	20.8	0.7844
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	25.9	0.7988
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	28.6	0.8384

Compare expression of checked genes

Lus10031513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.