Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06130 109 / 3e-26 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 108 / 3e-25 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 105 / 5e-24 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G27690 94 / 8e-21 Heavy metal transport/detoxification superfamily protein (.1) AT1G23000 82 / 9e-17 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 78 / 8e-16 Heavy metal transport/detoxification superfamily protein (.1) AT4G23882 69 / 7e-13 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 66 / 1e-12 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 64 / 7e-12 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 61 / 9e-11 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029942 [exp] 135 / 2e-34 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 134 / 1e-33 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10041228 [exp] 105 / 3e-24 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032445 [exp] 88 / 6e-19 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10031495 [exp] 86 / 5e-18 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 84 / 3e-17 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 65 / 3e-12 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 65 / 4e-12 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 63 / 1e-11 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036300 [exp] 112 / 1e-26 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.013G025300 [exp] 107 / 1e-24 AT3G06130 96 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G202800 [exp] 105 / 4e-24 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.010G024700 [exp] 96 / 1e-21 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 92 / 1e-20 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 92 / 2e-20 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 92 / 5e-20 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 90 / 5e-19 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 80 / 2e-16 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 79 / 7e-16 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10031514 pacid=23155836 polypeptide=Lus10031514 locus=Lus10031514.g ID=Lus10031514.BGIv1.0 annot-version=v1.0 ATGAGTAAGCATGATGTCATGAAGATGCAGACCTGGGTTCTAAGAGTGAACATTCAGTGTCAATGTGATGGCTGTGAGTCCAAAATCAAGAAGCTCCTCC AGAAAATTGATGGGGTGTATACTACACAAGTGAATGTGGAGCAAGGGAGAGTGAGTGTGACTGGGAACGTTGACCCATCAAAGCTGATAAAGAAGCTTGA GAAGTCAGGGAAGCATGCTGAGATTTGGGTTGGAGGAGGAGGAGGAGGAGGATCTAAGGGAGGATCAAACAAGGTGGAGAGTGGGAAAGGGAAAGATAAG GGAGGCGCCGGTAAAGGCGGGCATCAACAAGGACAGCAGCATCAACAGCATCAGCATCAGATGCATCAGCTGCAGCAGCAGTTCAAAGGGCTGCCTAAAG ACTTTAAGATGCCACAACAGAACAAGGAGATGAAATCTGTCAAGTTCAATTTGCAGCCTCAGCATCAGCATAGCAAGCATCATGGGTTTGATGATGACGA ATCTGGTGACGATTTCGATGATGAGTTCGATGATGAATTCCATGACGACGATGATGATTTCGATGATGATGATTCAGAGGAGGAGTTTGGCCTTGGCCAT GGCCACGGTCATGGTCAGGCTCCTAACAAGATGATGATGCAAAACAAGATGATGGGGATGATGGGGAATGGCCATGGTCAAATGGGGATGATGGGGAATG GCCATGGACCAATGGGGATGATGAACATGCCGGAGAAGAAAGCCGGTGGTGGGAATGGTAAGGGTGGTGGTGGAGGGAAGAAAGGTGGAGATGGTGAGGG CAAGAATGGGAAGAAGGAGAAGGAGAAGGAGAAGAAGAATAAAGGGGGAGAAGGTAAAAGCAAGGGTGGAAAGAGTAATGAGAAGAAGAAAAGCAAAAGC AAAGGGCTTGGTGGGTTGATTGGGTTTGGAAAGAGTAGCCATGATTGCAAGAAAAGTGTCCATCTTTCTTCATCATTCCAGGATCTTGACAGCAAGAGCA AGAGCAAAAATGGAGAAGGTAAAAGTAAAAGCAATGGAGGAGGAGGAGGAGGAGGCAAGAAAGGTGGAAATGGAGGAGGTAAACTTGATGGGTCCCATGA CTTTAAGCCAATGAAGAATCAAGGTGGTGGGTTTGGTGAGATTGGTGGCAATAGTTATGGTGGTAGAAATATGCCCCATATGGGAGCCCCCCAAATGGGC TCAGTGAGCAATTATGGTCCTCCTGCTGCTATGCAGGGAATGCCTGCGATGAACCATGGCGGTAGCCGCAACGGAGGAGGAGGAGGGTACTACAATCCTT ATCAAGGGATGGGGCAAGGAAACCCTCACAATCAGCAGCAGTATATGGAGATGATGATGATGAACCATCAGCAGCAGCAACAGAGGCAAAATGGGAATGG GATGTTTCATCCTATGATGCAGCAGCAGCAGCATTCCAGGCCATATCCTTACATGGCACCGCCTCCGATGCCAGGACCTGATCCTTACTCTCACTACATG AGTGATGAGAACGCTGAGAGTTGCAGTATAATGTGA
AA sequence Show only first row Show all	>Lus10031514 pacid=23155836 polypeptide=Lus10031514 locus=Lus10031514.g ID=Lus10031514.BGIv1.0 annot-version=v1.0 MSKHDVMKMQTWVLRVNIQCQCDGCESKIKKLLQKIDGVYTTQVNVEQGRVSVTGNVDPSKLIKKLEKSGKHAEIWVGGGGGGGSKGGSNKVESGKGKDK GGAGKGGHQQGQQHQQHQHQMHQLQQQFKGLPKDFKMPQQNKEMKSVKFNLQPQHQHSKHHGFDDDESGDDFDDEFDDEFHDDDDDFDDDDSEEEFGLGH GHGHGQAPNKMMMQNKMMGMMGNGHGQMGMMGNGHGPMGMMNMPEKKAGGGNGKGGGGGKKGGDGEGKNGKKEKEKEKKNKGGEGKSKGGKSNEKKKSKS KGLGGLIGFGKSSHDCKKSVHLSSSFQDLDSKSKSKNGEGKSKSNGGGGGGGKKGGNGGGKLDGSHDFKPMKNQGGGFGEIGGNSYGGRNMPHMGAPQMG SVSNYGPPAAMQGMPAMNHGGSRNGGGGGYYNPYQGMGQGNPHNQQQYMEMMMMNHQQQQQRQNGNGMFHPMMQQQQHSRPYPYMAPPPMPGPDPYSHYM SDENAESCSIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	0	1
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	2.8	0.8206
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	4.2	0.8191
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	5.0	0.8125
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10019423 [exp]	6.7	0.7834
AT5G56520			unknown protein		Lus10005700 [exp]	8.8	0.8058
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	10.6	0.7849
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	12.3	0.7979
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	12.8	0.8138
AT1G72020			unknown protein		Lus10009443 [exp]	17.3	0.7403
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	19.9	0.7579

Compare expression of checked genes

Lus10031514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.