Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05200 220 / 6e-69 ATL6 RING/U-box superfamily protein (.1) AT5G27420 210 / 3e-65 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT4G09120 174 / 1e-51 RING/U-box superfamily protein (.1) AT4G09130 164 / 9e-48 RING/U-box superfamily protein (.1) AT1G22500 164 / 1e-47 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT1G72200 162 / 1e-46 RING/U-box superfamily protein (.1) AT1G35330 157 / 1e-45 RING/U-box superfamily protein (.1) AT2G35000 159 / 2e-45 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT4G40070 152 / 2e-43 RING/U-box superfamily protein (.1) AT2G34990 140 / 5e-39 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015167 [exp] 502 / 1e-180 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10000333 [exp] 359 / 3e-123 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10004460 [exp] 349 / 3e-119 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10029949 [exp] 273 / 3e-91 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10029794 [exp] 180 / 8e-53 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10036466 [exp] 172 / 2e-50 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 171 / 5e-50 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10000487 [exp] 122 / 4e-32 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1) Lus10004572 [exp] 115 / 2e-29 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025800 [exp] 288 / 2e-95 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 275 / 2e-90 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 175 / 4e-51 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 117 / 1e-30 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 109 / 5e-28 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 101 / 6e-24 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 97 / 3e-22 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 96 / 7e-22 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 95 / 1e-21 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 93 / 3e-21 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031515 pacid=23156048 polypeptide=Lus10031515 locus=Lus10031515.g ID=Lus10031515.BGIv1.0 annot-version=v1.0 ATGGCAAAGGAAGAATTCATTTCCAAAAGAAAACTCCCCGCGGCCGTCGGCGGCGGCGGCGGGAGCTTCGGCAACAGATCTCGCCGCGGAGGCGCCGCTG CAGCTTCGAGAGGACTAGATCAGGCAGTCATCGAGACGTTCCCGACGATGATCTACTCCGCTGTGAAAGGGATGAAGATCGGGAAGGAAGATCTGGAGTG CGCCGTCTGTTTGAACGAGTTCGACGACGACGAAACACTGCGTTTGATCCCGAACTGCGACCACGTCTTTCACCCGGAGTGTATCGACGCTTGGCTCGAA TCTCACACCACTTGTCCAGTCTGCCGAGCGAATCTGGCTCCGCAGCCTGGCGATTCAGCGCCGCCGAGTCAACTCACTTCCGAGTTGGGATTGACGAGGA CTGCGACGTCGACGACTCAGTCCGAGTCTGATTTGGAGGCGGGACCGCAAACCGACGCCGTGTTGGACCGGGTTGGGGACTGTGAACGTGAGACTGACAC GGAAGAGGTTGTGGTTGCGGACCGGGTTTTAAACCGGAACCGTACACGTGGGAGGCCACGTAAGTTTCCAAGGTCACACTCGACGGGCCACTCAGTGGTC CAGCCGGGTGAGAATACAGATCGGTTCACTTTGAAACTACCGGCTGACGTTAGGAAGCGGTTGATGGTGAATCGGGAGCTGAACCGCACTATGAGCTTGA TCGTGTTGCCTCGAGAAGGGAGCACGAGGCGAGGGTATCGAATGGATGGAGCCAATAGTGGGAAGTATTCCAAGTACAGGAAGTTAGAGCCGTTGGAGAC GGAAAGTAAGTCGAACCGATGGACGTTCAACCGAACCTCATCGTTCTTGACCAGGGCGTCTTCGTTCTTGACAAGGGCGTCTTCCTCGGTTCGATCTCCT CGAGTGGTGGGGAGGAATGATGAGGGTGGACCGTCTAGTAGACCGGTCGGGCAAGATACTATCCAATCGGTTCGACCTCCGGTTTGA
AA sequence Show only first row Show all	>Lus10031515 pacid=23156048 polypeptide=Lus10031515 locus=Lus10031515.g ID=Lus10031515.BGIv1.0 annot-version=v1.0 MAKEEFISKRKLPAAVGGGGGSFGNRSRRGGAAAASRGLDQAVIETFPTMIYSAVKGMKIGKEDLECAVCLNEFDDDETLRLIPNCDHVFHPECIDAWLE SHTTCPVCRANLAPQPGDSAPPSQLTSELGLTRTATSTTQSESDLEAGPQTDAVLDRVGDCERETDTEEVVVADRVLNRNRTRGRPRKFPRSHSTGHSVV QPGENTDRFTLKLPADVRKRLMVNRELNRTMSLIVLPREGSTRRGYRMDGANSGKYSKYRKLEPLETESKSNRWTFNRTSSFLTRASSFLTRASSSVRSP RVVGRNDEGGPSSRPVGQDTIQSVRPPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	0	1
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	1.0	0.9316
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	1.7	0.8991
					Lus10018325 [exp]	3.5	0.8489
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	3.5	0.9086
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	4.0	0.8435
AT3G09032			unknown protein		Lus10027777 [exp]	4.9	0.8709
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	5.3	0.8912
AT3G57810			Cysteine proteinases superfami...		Lus10028840 [exp]	8.8	0.7918
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	8.8	0.8491
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	9.2	0.8776

Compare expression of checked genes

Lus10031515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.