Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27390 292 / 1e-100 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015165 [exp] 419 / 1e-150 AT5G27390 307 / 2e-106 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026500 [exp] 320 / 2e-111 AT5G27390 302 / 2e-104 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031517 pacid=23155928 polypeptide=Lus10031517 locus=Lus10031517.g ID=Lus10031517.BGIv1.0 annot-version=v1.0 ATGGCTATCCTCCTCCCATCCTCGTCCAATCCTCCATACCCACAATCCCAAAACCCCACAACCCCTAACAATTCCTTCCCTAACAACAATGTCATCATTT CCCTCTCCAAGAGACAGCTCTTGCTCAGAACAGCTTCACTCTGCCTAGTCACTCTACCTGCAGCTCAAACCCTTGCTGCTCCAAAGCCTGGAACTTTCTC AGGAATCGCCAACACCAGAGCTTGGTTCCAGTACTTTGGAAGCGGGTTCTCCATCCGGATCCCTCCCCAGTTTCAAGACATGACTGAGCCTGAGGATTAC AATGCTGGGTTGTCTCTCTATGGCGACAGAGCCAAAGTTAAGACCTTTGCTGCTCGTTTTGAGTCTGCTGATGGGTCCGAAGTTGTTAGTGTCGTTATTA AGCCCACCAATCAACTCAAGATCACCTTCTTAGAGGCTAAAGATGTTAGTGATTTAGGTTCCTTAAAGGAGGCAGCAAAGATCTTCGTTCCCGCCGGGTC GACTTTATTCTCCGCGAGAACGATCAAAATAAAGGAAGAAGAAGGCCTCAGGAACTATTACTTCTACGAATTCGGCCGATATGACCAGCATGTGGCGCTC ATGGCCGCAGTCAATAGTGGAAAGGCTATCATTGCTGGAGCAGCAGCTCCCCAGGAGAAATGGGACGACGATGGAGTCAAGCTTCGTTCGGCTGCTATTT CGATGACCGTCCTGTAA
AA sequence Show only first row Show all	>Lus10031517 pacid=23155928 polypeptide=Lus10031517 locus=Lus10031517.g ID=Lus10031517.BGIv1.0 annot-version=v1.0 MAILLPSSSNPPYPQSQNPTTPNNSFPNNNVIISLSKRQLLLRTASLCLVTLPAAQTLAAPKPGTFSGIANTRAWFQYFGSGFSIRIPPQFQDMTEPEDY NAGLSLYGDRAKVKTFAARFESADGSEVVSVVIKPTNQLKITFLEAKDVSDLGSLKEAAKIFVPAGSTLFSARTIKIKEEEGLRNYYFYEFGRYDQHVAL MAAVNSGKAIIAGAAAPQEKWDDDGVKLRSAAISMTVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10031517 [exp]	0	1
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	1.0	0.9223
AT2G23820			Metal-dependent phosphohydrola...		Lus10019968 [exp]	1.7	0.9141
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	2.8	0.8812
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	4.9	0.9157
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	6.3	0.8979
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	9.6	0.9061
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	11.6	0.8776
					Lus10040882 [exp]	18.0	0.8850
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	18.2	0.8755
AT2G33250			unknown protein		Lus10023703 [exp]	18.7	0.8138

Compare expression of checked genes

Lus10031517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.