Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05170 367 / 5e-128 Phosphoglycerate mutase family protein (.1) AT1G08940 327 / 7e-113 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015164 [exp] 505 / 0 AT3G05170 421 / 2e-149 Phosphoglycerate mutase family protein (.1) Lus10029974 [exp] 430 / 3e-153 AT3G05170 410 / 4e-145 Phosphoglycerate mutase family protein (.1) Lus10035350 [exp] 323 / 3e-111 AT3G05170 317 / 1e-108 Phosphoglycerate mutase family protein (.1) Lus10032291 [exp] 193 / 5e-61 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1) Lus10024659 [exp] 193 / 8e-61 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037900 [exp] 377 / 3e-132 AT3G05170 441 / 2e-157 Phosphoglycerate mutase family protein (.1) Potri.003G131200 [exp] 249 / 2e-81 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10031518 pacid=23155814 polypeptide=Lus10031518 locus=Lus10031518.g ID=Lus10031518.BGIv1.0 annot-version=v1.0 ATGGTAGATCCAACTCAGAACGGCGACCACCACCATCACCACAGCTTACCAAAACGGATAATCCTGGTCCGGCACGGGGAGTCGCAGGGGAACCTGGACA CGGCGGCGTACACGCACATCCCGGACCACAAGATCCCGCTCACCGAATCGGGTCGGGCGCAGGCGAGGGAGACGGGGGCCCGATTGCAGGCCTTGATTTC GGGAGGAACAAGCAATTCGTCGAATGCGTGGCGTGCTTACTTCTACGTGTCGCCGTACGACAGGACGCTGTCGACGCTGAGGGAGATCGGGAAGGCGTTC GACAGGGAGAGGATAATTGGGGTTAGAGAAGAGTGTAGGGTGAGGGAGCAGGATTTCGGCAACTTTCAGGAGGCGGAGAGGATGAAGGCGATCAAGGAGG CGAGGGAGAAGTTTGGGAGGTTCTTTTTCCGGTTCCCTGAAGGGGAATCGGCTGCTGATGTCTTCGATCGCGTTTCAACTTTTCTCGAATCCCTATGGAG AGACATAGACATGAACAGGCTTCACCAGGACCCATCCCACGATCTAAACCTCATAATCATAACACACGGACTAACTTCCCGGGTATTCCTCATGAAGTGG TTCAAGTGGACAGTAGAGCAATTCGAGCTGCTAAACAACCCTGGGAACTGCGAGTTTCGAGTTATGCAGCTGGGGACGGGAGGAGAATACAGCCTAGCAG TCCACCACACCGAGGAAGAGCTCCGAGAATGGGGCCTTTCGGAAGAGATGATCGAAGACCAGAAATGGCGAGCCACAGTGAATCGGGGGGAGTGGAACCA GAGTTGCCCCTGGTTCCTCGACGGATTCTTCGATCCCCTACAGGGCTCTAATGAAGACGAACCATCAAGCACATGA
AA sequence Show only first row Show all	>Lus10031518 pacid=23155814 polypeptide=Lus10031518 locus=Lus10031518.g ID=Lus10031518.BGIv1.0 annot-version=v1.0 MVDPTQNGDHHHHHSLPKRIILVRHGESQGNLDTAAYTHIPDHKIPLTESGRAQARETGARLQALISGGTSNSSNAWRAYFYVSPYDRTLSTLREIGKAF DRERIIGVREECRVREQDFGNFQEAERMKAIKEAREKFGRFFFRFPEGESAADVFDRVSTFLESLWRDIDMNRLHQDPSHDLNLIIITHGLTSRVFLMKW FKWTVEQFELLNNPGNCEFRVMQLGTGGEYSLAVHHTEEELREWGLSEEMIEDQKWRATVNRGEWNQSCPWFLDGFFDPLQGSNEDEPSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	0	1
AT1G74360			Leucine-rich repeat protein ki...		Lus10015729 [exp]	8.8	0.9558
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	11.1	0.9665
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	11.3	0.9671
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	12.2	0.9311
					Lus10005525 [exp]	13.1	0.9624
AT4G10950			SGNH hydrolase-type esterase s...		Lus10032399 [exp]	14.1	0.9637
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	15.5	0.9573
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	21.3	0.9452
AT2G15760			Protein of unknown function (D...		Lus10019892 [exp]	21.6	0.9200
AT1G74360			Leucine-rich repeat protein ki...		Lus10003477 [exp]	21.6	0.9531

Compare expression of checked genes

Lus10031518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.