Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04570 469 / 6e-166 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 435 / 2e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14820 271 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 270 / 1e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 270 / 1e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 268 / 3e-87 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G75900 265 / 2e-85 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 265 / 3e-85 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G06990 261 / 3e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015162 [exp] 669 / 0 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 432 / 3e-151 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 281 / 1e-91 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 280 / 2e-91 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005279 [exp] 276 / 1e-89 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013956 [exp] 273 / 8e-89 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 272 / 1e-88 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 269 / 4e-87 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 268 / 1e-86 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160100 [exp] 514 / 0 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 443 / 9e-156 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 435 / 3e-152 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 426 / 4e-148 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 286 / 9e-94 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 279 / 1e-90 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G051900 [exp] 274 / 3e-89 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 268 / 8e-87 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 266 / 5e-86 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 264 / 3e-85 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10031520 pacid=23155780 polypeptide=Lus10031520 locus=Lus10031520.g ID=Lus10031520.BGIv1.0 annot-version=v1.0 ATGGCAAAACGACACCCCGTTTCACTCCTCCTCCTCCTCCCATTCCTCCTCCTCACCGTCGTTGAAGCGAAGGTTCCGGCAATCATCGTGTTCGGGGACT CCTCCGTGGACGCCGGGAACAACAACTTCATCCCCACCGTCGCCCGAAGCAACTTCGAGCCGTACGGCCGTGCCTTCCCCCGCGGGAAGCACACGGGGCG CCTCCCATTGCTCCTCCCCCTCCTCCTCACCGTCGTCCTTGTCAAAGCGAAGGTTCCGGCAATCATCGTGTTCGGGGACTCCTCCGTGGACGCCGGGAAC AACAACTTCATCCCCACCGTCGCCCGAAGCAACTTCGAGCCGTACGGCCGTGACTTCTCCGGCGGGAAGCCCACGGGGAGATTCTCCAACGGTAGGATCG CTACGGACTTTATATCCGAGGCCTTTGGGCTTAGGCCCACTGTCCCTGCCTACTTGGACCCGGCCTATAACATCTCTGACTTCGCCGTCGGCGTCTCTTT CGCCTCCGCCGGCACCGGTTACGATAACGCCACCTCAAATGTCCTCTCAGTGATCCCGCTGTGGAAAGAGATAGAGTATTACAAGGAGTACCAAGGCAAG CTAAGGGCCCACCTAGGTGACGCCCAAGCCAACACGGTCCTCGCCGAGGCACTCTACGTTACGAGCATGGGCACCAACGACTTCCTCGAGAACTACTACA CCATGATGCCCGGTGGTCGGGCTTCACAGTACACTATCGGTGAGTTTCAGACATTCCTTGTCGAGATCGCAGAGAGTTTCTACAAAGAACTCTACGGTCT CGGTGCAAGGAAGGTCTCGATTGGAGGGATCCCTCCTATGGGGTGCATGCCTCTGGAGAGAACCACCAATGTCATGGGTAGTCGCGATTGTGTCGAAAGG TACAACGTGGTCGCATCGGAGTTCAATTCAAAGATGAAGAACTTAACAGACAAACTTAACGGTGAACTTATTGGTGCTCGGTTTGTGTTCTCTAATCCGT ATAACGCCTTGATGAGGATCATCCGACGGCCTTCCTTGTATGGGATGGCGGTAACGGCAACAGCGTGCTGCGCAACAGGGATGTTCGAGATGGGGTACGC GTGCGAGAGGAACCGGATGTTCACTTGCTCCAACGCCGACGAGTACGTGTTCTGGGATGCTTTTCATCCGACTCAGAAGACCAACCAGATCATCGCGCAA TATGTCGTTGACCGTGTTCTCAAACCCTTTATGTGA
AA sequence Show only first row Show all	>Lus10031520 pacid=23155780 polypeptide=Lus10031520 locus=Lus10031520.g ID=Lus10031520.BGIv1.0 annot-version=v1.0 MAKRHPVSLLLLLPFLLLTVVEAKVPAIIVFGDSSVDAGNNNFIPTVARSNFEPYGRAFPRGKHTGRLPLLLPLLLTVVLVKAKVPAIIVFGDSSVDAGN NNFIPTVARSNFEPYGRDFSGGKPTGRFSNGRIATDFISEAFGLRPTVPAYLDPAYNISDFAVGVSFASAGTGYDNATSNVLSVIPLWKEIEYYKEYQGK LRAHLGDAQANTVLAEALYVTSMGTNDFLENYYTMMPGGRASQYTIGEFQTFLVEIAESFYKELYGLGARKVSIGGIPPMGCMPLERTTNVMGSRDCVER YNVVASEFNSKMKNLTDKLNGELIGARFVFSNPYNALMRIIRRPSLYGMAVTATACCATGMFEMGYACERNRMFTCSNADEYVFWDAFHPTQKTNQIIAQ YVVDRVLKPFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	0	1
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	1.0	0.9659
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	2.8	0.9564
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10030209 [exp]	3.0	0.9398
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	4.9	0.9528
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	6.0	0.9524
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	6.5	0.9420
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	6.5	0.9448
					Lus10021894 [exp]	6.5	0.9301
					Lus10017869 [exp]	8.9	0.9387
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	9.5	0.9502

Compare expression of checked genes

Lus10031520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.