Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62422 81 / 3e-19 unknown protein AT1G12020 80 / 2e-18 unknown protein AT1G24270 74 / 2e-16 unknown protein AT5G13090 68 / 9e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015161 [exp] 155 / 2e-48 AT1G62422 97 / 8e-26 unknown protein Lus10029957 [exp] 128 / 4e-37 AT1G62422 141 / 2e-42 unknown protein Lus10011343 [exp] 58 / 4e-10 AT5G13090 149 / 2e-43 unknown protein Lus10003131 [exp] 57 / 5e-10 AT1G24270 87 / 2e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001800 [exp] 97 / 7e-25 AT1G12020 135 / 3e-39 unknown protein Potri.011G022900 [exp] 95 / 4e-24 AT1G12020 115 / 2e-31 unknown protein Potri.015G099400 [exp] 74 / 1e-15 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.012G101200 [exp] 70 / 2e-14 AT5G13090 93 / 2e-22 unknown protein Potri.001G059400 [exp] 61 / 2e-11 AT5G13090 119 / 8e-32 unknown protein Potri.003G168500 [exp] 61 / 3e-11 AT5G13090 100 / 1e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031521 pacid=23155833 polypeptide=Lus10031521 locus=Lus10031521.g ID=Lus10031521.BGIv1.0 annot-version=v1.0 ATGAAGAATCCTTACAAGAAAGGCAAAATTCATCCCTCTACCACCACCTCACCACCGCCGTCGCCTTCTTCCACCACAGCGACCACCTTCCTCTCCTTCC TACCGGCCACGATCCTCGCCCTCACGGTCGGTCTCACCCCTCAGGACAAGCAAGTCCTGGCCTACCTCATCTCCTGCGGTGATCACCGGACCATTGTCTC TTATAACCAACAAGATAGAAAAAACAAAAAATTAACGGCCGGCGTTGATCACGGACCCAAGTTCGAGTGCACCTGCTTTAGGTGCTACATGACGTTCTGG GCCCAGTGGGACGCCTCCTCGAACCGCCACGTGATCCATGAGATCATCGAGGCGTATGAGGAGACGCTCACGACCACTACACAGTGCCAGAAGAAGAAGA AGAGTAGCAGGAAGAGGTCGACGCCAACAAGGAAGGTTGTGGAATTGGAGGAGTTGACGACGAGCTCCGACATGAGTTTCGAGGAGGGCGGCGGCGGGGA GGTTGAGGAGGAGGAGAGTAGTGCTGTGAGGAAGATTGTGAGCTTTGTTGGTGATAGGATCATTGGGAATTTTTGGAGGGCTTAG
AA sequence Show only first row Show all	>Lus10031521 pacid=23155833 polypeptide=Lus10031521 locus=Lus10031521.g ID=Lus10031521.BGIv1.0 annot-version=v1.0 MKNPYKKGKIHPSTTTSPPPSPSSTTATTFLSFLPATILALTVGLTPQDKQVLAYLISCGDHRTIVSYNQQDRKNKKLTAGVDHGPKFECTCFRCYMTFW AQWDASSNRHVIHEIIEAYEETLTTTTQCQKKKKSSRKRSTPTRKVVELEELTTSSDMSFEEGGGGEVEEEESSAVRKIVSFVGDRIIGNFWRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62422			unknown protein		Lus10031521 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	6.9	0.9477
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	8.3	0.9183
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10007495 [exp]	8.6	0.8951
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	10.1	0.9400
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10014755 [exp]	10.5	0.9385
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	11.0	0.9146
AT5G06730			Peroxidase superfamily protein...		Lus10008174 [exp]	13.8	0.9114
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	16.1	0.9336
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10021490 [exp]	17.7	0.9313
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	19.1	0.9319

Compare expression of checked genes

Lus10031521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.