Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04985 218 / 2e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015157 [exp] 328 / 8e-116 AT1G04985 225 / 1e-75 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159600 [exp] 219 / 6e-73 AT1G04985 192 / 9e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031525 pacid=23155863 polypeptide=Lus10031525 locus=Lus10031525.g ID=Lus10031525.BGIv1.0 annot-version=v1.0 ATGCAGAGGCTGAGGGGTAAAGGAATGTCGCTTCTCAGCTCGATTCCACGTTTGAAGAAGAGAGCTCACAATTCGTTCTCCGCCGTTCAGGACACTTACC TCTCCACAAAGGATACGTTCGAGAGGCATAGGGTTGTGTTTACAGTCGGGACTTCTTTGGCATCAGTTGCCACAGCATGGGTTGGATATACTCTCCGTCA TGCTCATGAACAACGAGTTGCTCAAAGGCTTGAAGCGATTGAGAAAGCTATGGCAAACAATCAGAGTATTGAACGAGCGGAGCTTAAGAAGATGGTTGAT CCGGGAACCTCGCGTTATGCTGCATATATAGCAACAGTTGGGACGACTTTTGTGATAGGGTACGGATGCGGTTGGCGAGGAGGAAAATGGTACGCGAACA GGAAGCACAGGCAAGAGCAGATGAAGTTGCTGGGGCAGATAAAACCTCGGAGGTGGGAGTTACTTGGCAAGATCAGATCCCGAGGATTGGGATTGCAGGC CCTACGAAGAAGATTATCAAGATCTAAAAGCTCCGAGACTACGACGAAAACAATTGAAAGGGCTCCGAAGAATGCACCATCTGCGTCTAACCCTTCTAGT AAACTCCACCAATCTAGTTAA
AA sequence Show only first row Show all	>Lus10031525 pacid=23155863 polypeptide=Lus10031525 locus=Lus10031525.g ID=Lus10031525.BGIv1.0 annot-version=v1.0 MQRLRGKGMSLLSSIPRLKKRAHNSFSAVQDTYLSTKDTFERHRVVFTVGTSLASVATAWVGYTLRHAHEQRVAQRLEAIEKAMANNQSIERAELKKMVD PGTSRYAAYIATVGTTFVIGYGCGWRGGKWYANRKHRQEQMKLLGQIKPRRWELLGKIRSRGLGLQALRRRLSRSKSSETTTKTIERAPKNAPSASNPSS KLHQSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04985			unknown protein		Lus10031525 [exp]	0	1
AT5G63905			unknown protein		Lus10007744 [exp]	14.9	0.6642
AT5G17510			unknown protein		Lus10024979 [exp]	24.6	0.6246
AT2G25720			unknown protein		Lus10032479 [exp]	45.3	0.6016
AT5G24165			unknown protein		Lus10014921 [exp]	53.8	0.5962
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	107.9	0.5587

Compare expression of checked genes

Lus10031525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.