Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32930 45 / 8e-06 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G02830 44 / 2e-05 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G63260 42 / 0.0001 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G48195 39 / 0.0001 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G48440 39 / 0.0007 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G16540 0 / 1 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT1G04990 0 / 1 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 0 / 1 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015156 [exp] 152 / 9e-45 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 99 / 2e-24 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10026996 [exp] 46 / 5e-06 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10043330 [exp] 41 / 0.0002 AT5G63260 357 / 3e-119 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10019481 [exp] 41 / 0.0002 AT5G63260 339 / 6e-112 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10013476 [exp] 40 / 0.0004 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 40 / 0.0004 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10020196 [exp] 0 / 1 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10035330 [exp] 0 / 1 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089100 [exp] 40 / 0.0003 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 40 / 0.0004 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 39 / 0.001 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.002G223700 [exp] 0 / 1 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.014G159500 [exp] 0 / 1 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.019G053200 [exp] 0 / 1 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.013G086800 [exp] 0 / 1 AT3G02830 542 / 0.0 zinc finger protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10031527 pacid=23155825 polypeptide=Lus10031527 locus=Lus10031527.g ID=Lus10031527.BGIv1.0 annot-version=v1.0 ATGCCGGCATTTCATGAACACCGGGACTTGCAGATATGGATCCGACTGCAAGTACCATCACCCAAAGGAGAGAAGAACACCACCGCCGCTCGGGTTAAAA CTGATGAACCGCCGCCTTTGGTCGGTTATCAACCGCACCACCAACTCCACCTGCATTTTAACCTCGTATTTGCCAAGCAGGGCCAAGCGCTATGTCCCAA CTACATTACATACGGGATATGCAAGTTCGGTACCAGCTGCAGATTCGATCACCCGTTCACCGGATATCCTTACAACTATAGCTTCGCCATCCCCCCTCCC TTACCAATGCTTGATTCATCCATGGTGACTTCTTACCCAAGAATGGTGACTTCTTCACCAAGTTACAATGTCTACAACGGTTCAGCTAGAAACATCAATC AACAACATCAGATGAACAATGCAGGTGCAAATAATAAGAAGACCACTGCTCCGACTCCCACCCCGACTACCCCACCAGACGAAACCACCACAAATGCTGC TCCTCCTCGTTGA
AA sequence Show only first row Show all	>Lus10031527 pacid=23155825 polypeptide=Lus10031527 locus=Lus10031527.g ID=Lus10031527.BGIv1.0 annot-version=v1.0 MPAFHEHRDLQIWIRLQVPSPKGEKNTTAARVKTDEPPPLVGYQPHHQLHLHFNLVFAKQGQALCPNYITYGICKFGTSCRFDHPFTGYPYNYSFAIPPP LPMLDSSMVTSYPRMVTSSPSYNVYNGSARNINQQHQMNNAGANNKKTTAPTPTPTTPPDETTTNAAPPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16540	C3HZnF	ZFN3	zinc finger nuclease 3 (.1.2.3...		Lus10031527 [exp]	0	1
AT1G65295			unknown protein		Lus10026997 [exp]	2.6	0.7783
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	3.7	0.7743
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	8.5	0.7420
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10042136 [exp]	13.9	0.7016
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	19.6	0.7265
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	25.4	0.7240
AT1G67570			Protein of unknown function (D...		Lus10032513 [exp]	42.7	0.6864
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	43.7	0.7068
AT2G33390			unknown protein		Lus10023738 [exp]	44.1	0.6951
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	45.5	0.6666

Compare expression of checked genes

Lus10031527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.