Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04990 192 / 7e-59 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 183 / 5e-55 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G02830 161 / 4e-47 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 155 / 5e-45 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT5G18550 153 / 1e-43 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 148 / 9e-42 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 145 / 3e-40 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT3G12680 118 / 2e-30 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT5G63260 116 / 5e-30 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 115 / 9e-30 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015156 [exp] 391 / 2e-136 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10035330 [exp] 282 / 4e-93 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 267 / 8e-87 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 163 / 2e-47 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 162 / 2e-47 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10034620 [exp] 145 / 5e-41 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 145 / 1e-40 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 145 / 2e-40 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 144 / 5e-40 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223700 [exp] 233 / 2e-74 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.014G159500 [exp] 226 / 9e-72 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.019G053200 [exp] 161 / 1e-46 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.013G086800 [exp] 160 / 3e-46 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.008G215700 [exp] 149 / 8e-42 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.010G022500 [exp] 147 / 2e-41 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.015G089100 [exp] 120 / 2e-31 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 120 / 4e-31 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 119 / 8e-31 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.012G092500 [exp] 118 / 1e-30 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10031528 pacid=23156067 polypeptide=Lus10031528 locus=Lus10031528.g ID=Lus10031528.BGIv1.0 annot-version=v1.0 ATGCCAGATACCAACATCAGTGGCAGCAATCAGAAGCAGCAGGTGAAGAGCAATGGTGGTTCGAATCATTCCTCTGATAACATCGAAGAAGCAATTCGAA GGTTGAAGATCCAGGACAACCATGATCAAAATGGTGGTGGTGGTGATGTGACCGAGCCCGGATCATACCCGGATCGACCCGGTGAACCCGACTGCATCTA TTACTTGAGGAATGGTGTTTGTGGTTACGCTAGTAATTGCAGGTACAATCATCCCAACCAGCATGCTCCACCCCTAGCAAAGGGTTCAAAGGGTGGTGAT CAGGAGCTTCCTGAGAGAGCTGGAGAGCCTGATTGTGGGTACTACCTGAAAACCGGTACATGCAAGTACGGAACGACTTGTAGATTTCATCACCCTAAGG ATAGGAATGGTGCTGGACCAGTCTCGTACAATCGCCTAGGTCTTCCTATGAGACAGGATGAGAAGCCATGCTCGTTCTACATGCGCACCGGATCATGCAA ATTCGGAGGAGCGTGCAAGTTCCATCACCCTCAACCTCCTCCTGCTGCGGCACCACTTGAACCTGGCGGCATACCCCTCTCTGGCCTCTCTACCTACGGA ACATCGACAGGTTCACCGATGATCCCCAGGTTACCATACATGTCAGCCCCTCCTCGTTTCGATAGCACACCGGCATTTGCACCAGTCTACATTTCTCCTC CTTCCCAAGGAGGCTGGAACAATTATGTAATACGAGTAGCAAGCAGCCTTTGTTTGATGTCTCTATTTCAAATTTGA
AA sequence Show only first row Show all	>Lus10031528 pacid=23156067 polypeptide=Lus10031528 locus=Lus10031528.g ID=Lus10031528.BGIv1.0 annot-version=v1.0 MPDTNISGSNQKQQVKSNGGSNHSSDNIEEAIRRLKIQDNHDQNGGGGDVTEPGSYPDRPGEPDCIYYLRNGVCGYASNCRYNHPNQHAPPLAKGSKGGD QELPERAGEPDCGYYLKTGTCKYGTTCRFHHPKDRNGAGPVSYNRLGLPMRQDEKPCSFYMRTGSCKFGGACKFHHPQPPPAAAPLEPGGIPLSGLSTYG TSTGSPMIPRLPYMSAPPRFDSTPAFAPVYISPPSQGGWNNYVIRVASSLCLMSLFQI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031528 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	3.6	0.8871
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	9.8	0.8755
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	11.2	0.8711
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	12.0	0.8685
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	13.7	0.8136
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	19.6	0.8634
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	19.6	0.8538
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	21.9	0.8539
AT3G17900			unknown protein		Lus10030797 [exp]	22.0	0.8371
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	22.3	0.8625

Compare expression of checked genes

Lus10031528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.