Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05000 300 / 6e-105 AtPFA-DSP1 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT4G03960 278 / 3e-96 AtPFA-DSP4 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) AT2G32960 275 / 2e-94 AtPFA-DSP2 plant and fungi atypical dual-specificity phosphatase 2, Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G02800 218 / 2e-72 AtPFA-DSP3 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1) AT5G16480 209 / 3e-69 AtPFA-DSP5 plant and fungi atypical dual-specificity phosphatase 5, Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015154 [exp] 355 / 3e-126 AT1G05000 298 / 3e-103 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10029991 [exp] 315 / 4e-110 AT1G05000 296 / 1e-102 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10035333 [exp] 313 / 2e-109 AT1G05000 291 / 2e-100 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159100 [exp] 325 / 1e-114 AT1G05000 310 / 3e-108 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.002G224000 [exp] 318 / 7e-112 AT1G05000 300 / 9e-105 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.011G021100 [exp] 292 / 1e-101 AT4G03960 288 / 4e-100 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.004G002800 [exp] 288 / 4e-100 AT1G05000 286 / 4e-99 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.013G086500 [exp] 214 / 3e-71 AT3G02800 296 / 2e-103 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF03162 [flax] [poplar] Y_phosphatase2 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10031529 pacid=23155981 polypeptide=Lus10031529 locus=Lus10031529.g ID=Lus10031529.BGIv1.0 annot-version=v1.0 ATGTGCAGGACGATTGAGGTCGCCTCCGTGATGATCAACCACCGCCGCAGCGAGGATCGGTTATCGGATTCTTCGCTGCAGCCGCTAAGTGATGAGCTGA GTTTCATCCCGCCGTTGAACTTCGCCATGGTTGATAATGGCATCTTCCGTTCCGGATTCCCTGACTCCGCTAACTTCTCCTTCCTCGAAACTCTGGGCCT CCGCTCCATCATATGCTTATGCCCGGAGCCGTATCCCGAGGCGAACGCGGAGTTCCTTAAGGCCAACGGAATCAAGCTTTTCCAGTTCGGAATTGAAGGT TACAAGGAGCCATTTGTAAACATCCCAGAGGACACAATCCGCGAAGCTCTAGAAGTAGTTCTCGATGTGAAGAATCATCCGGTATTGATCCATTGCAAAC GGGGCAAGCATCGGACAGGTTGCGTGGTGGGATGCTTGCGGAAACTCCAGAAGTGGTGCTTATCGTCGATATTCGACGAGTACCAGAGGTTTGCAGCAGC CAAAGCTAGAGTATCGGACCAGAGGTTTATGGAGCTGTTCGATGTTTCGAGCTTGAAGCATGTGTCGATGTCGTTTTCGTGCTCCAAGAGATAA
AA sequence Show only first row Show all	>Lus10031529 pacid=23155981 polypeptide=Lus10031529 locus=Lus10031529.g ID=Lus10031529.BGIv1.0 annot-version=v1.0 MCRTIEVASVMINHRRSEDRLSDSSLQPLSDELSFIPPLNFAMVDNGIFRSGFPDSANFSFLETLGLRSIICLCPEPYPEANAEFLKANGIKLFQFGIEG YKEPFVNIPEDTIREALEVVLDVKNHPVLIHCKRGKHRTGCVVGCLRKLQKWCLSSIFDEYQRFAAAKARVSDQRFMELFDVSSLKHVSMSFSCSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	0	1
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	2.0	0.9226
AT5G49600			Protein of unknown function, D...		Lus10037804 [exp]	2.2	0.8859
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	3.0	0.8609
AT1G23110			unknown protein		Lus10007928 [exp]	3.5	0.8829
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	4.2	0.9071
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	5.2	0.9038
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	6.0	0.8931
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	9.2	0.8803
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	9.5	0.8564
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	9.5	0.8490

Compare expression of checked genes

Lus10031529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.