Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05010 456 / 8e-163 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT1G12010 414 / 5e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 413 / 8e-146 ATACO2, ACO2 ACC oxidase 2 (.1) AT2G19590 279 / 4e-93 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G77330 263 / 5e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 171 / 3e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 164 / 1e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 164 / 3e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10490 157 / 2e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 155 / 2e-44 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015153 [exp] 575 / 0 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10029992 [exp] 521 / 0 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10035334 [exp] 517 / 0 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10008564 [exp] 283 / 2e-94 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10028678 [exp] 280 / 4e-93 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000857 [exp] 276 / 6e-92 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 160 / 3e-46 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 159 / 4e-46 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011980 [exp] 159 / 5e-46 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159000 [exp] 491 / 1e-176 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 480 / 4e-172 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 475 / 2e-170 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.004G003000 [exp] 475 / 3e-170 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.006G151600 [exp] 295 / 2e-99 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.005G182700 [exp] 281 / 5e-94 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 281 / 6e-94 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 182 / 1e-54 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 181 / 2e-54 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 169 / 7e-50 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031530 pacid=23155992 polypeptide=Lus10031530 locus=Lus10031530.g ID=Lus10031530.BGIv1.0 annot-version=v1.0 ATGGAGTTCCCAGTCATCAACATGGATAAGCTCGCCGGCGACGAGAGATCCGCCACCATGGCTCAGATCAAAGATGCCTGCGAAAACTGGGGCTTCTTTG AGGTGCTGAACCATCCAATCCAAGTGGAGCTACTCGACACGGTCGAAAAGATGACTAAGGAGCATTACAGGAAATGTATGGAGCAGAGGTTCAAGGAGCT TGTGAAGAGCAAAGGGCTCGAAGAAGTCGACTCCGAGATCAAGGATATGGATTGGGAGAGCACATTCTTCCTCCGCCACCTCCCTGATTCGAACATCAAC GAAATCCCCGACCTCGAGGAGGATTACAGAAAGGTGATGAAGGAGTTTGCCGGAAAATTGGAAAAGCTGGCGGAGGAGTTGCTCGATCTGCTGTGCGAGA ATCTCGGATTGGAGAGGGGGTACTTGAAGAAGGTCTTCTACGGACCCAAAGGGTCGCCGAATTTCGGGACGAAAGTCAGCAACTACCCTCCATGCCCGAA GCCTGATCTGGTGAAGGGACTTCGGGCCCACACTGATGCTGGAGGCATCATTTTATTGTTCCAGGACGACAAGGTGAGCGGCCTCCAGCTTTTGAAAGAC GGGAAGTGGGTTGATGTGCCGCCAATGCACCACTCCATCGTGGTCAACCTTGGAGACCAAATCGAGGTGATTACGAATGGGAAGTATAAGAGCGTGGAGC ATAGGGTGGTGGCGCAAACGGACGGGACGCGGATGTCGATCGCGTCGTTCTACAACCCTGGGAGCGATGCGGTGATCTACCCTGCACCGGAGCTCGTCGA AAAAGAAAAAGAGGAGAAGAAGGTTGCTACAACTTACCCTAAGTTTGTGTTTGAGGACTACATGAAGCTCTATGCTGGTTTGAAGTTTGAGGCCAAGGAG CCAAGATTTGAAGCCATGTTGAAGTCCATGGATGTGGGTCCAATTGCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10031530 pacid=23155992 polypeptide=Lus10031530 locus=Lus10031530.g ID=Lus10031530.BGIv1.0 annot-version=v1.0 MEFPVINMDKLAGDERSATMAQIKDACENWGFFEVLNHPIQVELLDTVEKMTKEHYRKCMEQRFKELVKSKGLEEVDSEIKDMDWESTFFLRHLPDSNIN EIPDLEEDYRKVMKEFAGKLEKLAEELLDLLCENLGLERGYLKKVFYGPKGSPNFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKD GKWVDVPPMHHSIVVNLGDQIEVITNGKYKSVEHRVVAQTDGTRMSIASFYNPGSDAVIYPAPELVEKEKEEKKVATTYPKFVFEDYMKLYAGLKFEAKE PRFEAMLKSMDVGPIATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	0	1
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	5.6	0.9197
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10005317 [exp]	6.3	0.9027
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	8.8	0.8935
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	9.6	0.9027
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	9.9	0.9131
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	11.2	0.9081
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	12.8	0.8815
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	20.0	0.8885
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	23.7	0.8684
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10011851 [exp]	24.4	0.8532

Compare expression of checked genes

Lus10031530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.