Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13445 333 / 4e-118 TFIID-1, TBP1 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) AT1G55520 328 / 4e-116 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020260 [exp] 344 / 3e-122 AT1G55520 380 / 3e-136 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10002634 [exp] 344 / 6e-122 AT1G55520 382 / 7e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10017716 [exp] 122 / 4e-35 AT1G55520 125 / 1e-36 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10015150 [exp] 111 / 5e-32 AT1G55520 100 / 3e-28 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10033675 [exp] 52 / 6e-09 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059300 [exp] 338 / 4e-120 AT1G55520 380 / 9e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Potri.019G033300 [exp] 337 / 2e-119 AT1G55520 376 / 4e-135 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0407 [flax] [poplar] TBP-like PF00352 [flax] [poplar] TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Representative CDS sequence Show only first row Show all	>Lus10031531 pacid=23156054 polypeptide=Lus10031531 locus=Lus10031531.g ID=Lus10031531.BGIv1.0 annot-version=v1.0 ATGACCGATCTTTCACCTGTCGATCTTTCCAAGCACCCTTCAGGAATCATTCCCACCTTACAGAACATAGTCTCCACAGTAAACCTGGACTGCAAGTTAG ATCTCAAACATATCGCCCTCCAAGCTCGCAATTCCGAATACAACCCGAAACGATTCACAGCCGTCATCATGCGAATCAGGGACCCTAAAACCTCCGCTCT GATCTTCGCATCCGGCAAGATGGTCTGCACGGGAGCGAAGAGCGAGCAGCATTCGAAATTGGCGGCGAGCAAGTTCGCCCGAATCATTCAGAAGCTCGGG CTTCCCGTAAAATTCAAGGATTTCATGATCCAGAACATAGTCGGATCGTGCGATGTGAAGTTCCCTATTTTCTTGGAGGGTATTGCTGCATCTCACGGAG CTTTCTCGAGCTACGAGCCTGAATTGTTCCCGGGGCTGATTTATTGGATGAGGCAGCCGAAGGTCGTGCTGCTCGTTCTCGTGTCGGGCAAGATTGTGAT TACGGGTGCTAAGAAGAGAGACGAGACGTATAGGGCGCTGGAGAATATATACCCTGTTCTTACTCAGTTTCGGAAAGTCGGTCGATAG
AA sequence Show only first row Show all	>Lus10031531 pacid=23156054 polypeptide=Lus10031531 locus=Lus10031531.g ID=Lus10031531.BGIv1.0 annot-version=v1.0 MTDLSPVDLSKHPSGIIPTLQNIVSTVNLDCKLDLKHIALQARNSEYNPKRFTAVIMRIRDPKTSALIFASGKMVCTGAKSEQHSKLAASKFARIIQKLG LPVKFKDFMIQNIVGSCDVKFPIFLEGIAASHGAFSSYEPELFPGLIYWMRQPKVVLLVLVSGKIVITGAKKRDETYRALENIYPVLTQFRKVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13445		TFIID-1, TBP1	TRANSCRIPTION FACTOR IID-1, TA...		Lus10031531 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	3.6	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	5.1	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	6.2	1.0000
					Lus10024141 [exp]	7.2	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	8.1	1.0000
					Lus10013255 [exp]	8.8	1.0000
					Lus10013259 [exp]	9.5	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	10.2	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	10.8	1.0000
					Lus10028570 [exp]	11.4	1.0000

Compare expression of checked genes

Lus10031531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.