Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47790 56 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT1G12870 53 / 5e-08 F-box and associated interaction domains-containing protein (.1) AT3G10240 51 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT4G21240 49 / 8e-07 F-box and associated interaction domains-containing protein (.1) AT1G12855 49 / 2e-06 F-box family protein (.1) AT1G47765 48 / 3e-06 F-box and associated interaction domains-containing protein (.1) AT3G21170 47 / 6e-06 F-box and associated interaction domains-containing protein (.1) AT1G53790 46 / 1e-05 F-box and associated interaction domains-containing protein (.1.2) AT1G31080 45 / 3e-05 F-box family protein (.1) AT1G51320 45 / 3e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015147 [exp] 75 / 2e-17 ND 37 / 7e-04 Lus10001105 [exp] 75 / 2e-15 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10015408 [exp] 74 / 4e-15 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10018969 [exp] 64 / 4e-12 AT1G32420 47 / 4e-06 F-box and associated interaction domains-containing protein (.1) Lus10029725 [exp] 64 / 2e-11 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10018008 [exp] 63 / 2e-11 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10009424 [exp] 61 / 2e-10 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10014935 [exp] 60 / 2e-10 AT3G06240 84 / 2e-17 F-box family protein (.1) Lus10028961 [exp] 58 / 1e-09 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318300 [exp] 67 / 6e-13 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 54 / 2e-08 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.008G006900 [exp] 53 / 4e-08 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 51 / 2e-07 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207401 [exp] 48 / 5e-07 AT3G07870 48 / 4e-07 F-box and associated interaction domains-containing protein (.1) Potri.018G007900 [exp] 49 / 7e-07 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.010G207500 [exp] 49 / 7e-07 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 49 / 8e-07 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.012G014700 [exp] 49 / 2e-06 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.005G043500 [exp] 45 / 1e-05 AT5G07610 135 / 7e-36 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10031533 pacid=23155777 polypeptide=Lus10031533 locus=Lus10031533.g ID=Lus10031533.BGIv1.0 annot-version=v1.0 ATGGGAACGAAGATGAAGAAGAAGCTGGGGATCCTGGTTGCAGTACTGGTACTGTTACTGGTGGGCAAAACTGCGAGAGCTTATGTGGACAATCGGGGCT ATTACCGCTGCGGCAAACAGTTCCACCATTGTAAGTGTCCCGCAGGACTATGCTGTGGTAAGAACAGCTACTGTGGAACCATCGATCTCTACTGCGGCGC CCACAATTGTCAAGACTCTTGTCCTCCCTCGCCGTCTCCGGAGTCAAAGCAAGAAATGACCGGCGGCGGAAACAACATTGTCTTCATACCGGAGGATCTA ATCAGCGACATCCTCGTCAGGCTACCCCGTTCAGCCACTGTCCGATTCCGCTTGGTCAGCAAAGAATGGGATAAGATCCTCTCCGATCCCAAATTCAACC TCCTGATCCTCATCACGGGAGTCGGAGAAAATTACGAGACCATCATCGACCACGTCGACAACATTCACTATTCCTTGGCAACTACCAAACCCTCCGCGCA GAGACACGTGGCAAAATTCCCCTATCCGACAGGATTCCCACGTGGAGCGACTATGTGCTGCGACGGAATATTCTGTATAAGCCGTATGAAGACCGAGTTA GTGTCGGAGATTCTTCTGTGGAATCCGGCCACCTCCGAGAATATGTTCTTGCCGCTTTTCCCCTTCCGAATTCCTCGGACCAACACACACCCTCGCCGTG CTTGA
AA sequence Show only first row Show all	>Lus10031533 pacid=23155777 polypeptide=Lus10031533 locus=Lus10031533.g ID=Lus10031533.BGIv1.0 annot-version=v1.0 MGTKMKKKLGILVAVLVLLLVGKTARAYVDNRGYYRCGKQFHHCKCPAGLCCGKNSYCGTIDLYCGAHNCQDSCPPSPSPESKQEMTGGGNNIVFIPEDL ISDILVRLPRSATVRFRLVSKEWDKILSDPKFNLLILITGVGENYETIIDHVDNIHYSLATTKPSAQRHVAKFPYPTGFPRGATMCCDGIFCISRMKTEL VSEILLWNPATSENMFLPLFPFRIPRTNTHPRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47790			F-box and associated interacti...		Lus10031533 [exp]	0	1
					Lus10037567 [exp]	1.4	0.9918
					Lus10015244 [exp]	1.4	0.9928
					Lus10033479 [exp]	3.5	0.9850
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	4.9	0.9765
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	5.5	0.9675
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	6.0	0.9624
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	10.4	0.9508
AT5G67620			unknown protein		Lus10019264 [exp]	13.6	0.9291
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	25.4	0.9623
					Lus10027902 [exp]	27.1	0.9557

Compare expression of checked genes

Lus10031533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.