Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08000 148 / 8e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 100 / 5e-28 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 88 / 3e-23 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G61030 90 / 2e-22 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G39260 78 / 7e-20 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT1G74230 81 / 2e-19 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G06210 77 / 1e-18 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47320 77 / 4e-18 RPS19 ribosomal protein S19 (.1) AT4G24770 78 / 5e-18 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 77 / 5e-18 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015146 [exp] 246 / 1e-85 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10034685 [exp] 95 / 2e-24 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 94 / 2e-24 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10021154 [exp] 93 / 9e-24 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10022551 [exp] 89 / 2e-23 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10040519 [exp] 94 / 4e-23 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10016639 [exp] 88 / 4e-23 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 85 / 7e-22 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 82 / 7e-21 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157300 [exp] 171 / 3e-56 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 99 / 2e-27 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.017G059000 [exp] 97 / 9e-27 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 91 / 3e-24 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 92 / 9e-24 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 91 / 2e-23 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.006G208500 [exp] 84 / 8e-22 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G225700 [exp] 80 / 3e-20 AT3G08000 64 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 81 / 4e-20 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G160300 [exp] 76 / 5e-19 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10031534 pacid=23155942 polypeptide=Lus10031534 locus=Lus10031534.g ID=Lus10031534.BGIv1.0 annot-version=v1.0 ATGCGCAGAACTCTGACCTCCGTCATCGGTAGAGCTTACGCAGCTGTTCATAACGCAACTTCTCCACCTGGACCCAACAGTAAACTATTCGTTGCAGGTC TGTCATGGTCGGTGAACGAGAAATCATTGAAAGACGCGTTCTCGTCGTTCGGTGAAGTGACAGAAGTGAGGATTGCGTACGACAGAGAGAGCGGGAGGTC GAGAGGGTTCGGGTTCGTGAGCTTCACGAAAGAGGACGAAGCCATGGTTGCGAAAGATGCAATGGATGGCAAGGCATTGCTAGGTCGACCATTGAGCATA AGCTTCGCCCTCGAAAGGGTTCGTGGCGGTTCGCCGGTTGTTCTCCCTCGACTGTCTAATGCAACGAACCATCCTACAAATTCTTAA
AA sequence Show only first row Show all	>Lus10031534 pacid=23155942 polypeptide=Lus10031534 locus=Lus10031534.g ID=Lus10031534.BGIv1.0 annot-version=v1.0 MRRTLTSVIGRAYAAVHNATSPPGPNSKLFVAGLSWSVNEKSLKDAFSSFGEVTEVRIAYDRESGRSRGFGFVSFTKEDEAMVAKDAMDGKALLGRPLSI SFALERVRGGSPVVLPRLSNATNHPTNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	0	1
AT5G44710			unknown protein		Lus10038399 [exp]	1.4	0.8883
AT5G64140		RPS28	ribosomal protein S28 (.1)		Lus10013543 [exp]	2.4	0.8680
AT1G57540			unknown protein		Lus10035345 [exp]	2.4	0.8882
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	3.9	0.8517
AT1G80700			unknown protein		Lus10026096 [exp]	6.6	0.8137
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	9.4	0.7984
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	9.6	0.8525
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	10.0	0.7509
AT1G26660			Prefoldin chaperone subunit fa...		Lus10030428 [exp]	11.4	0.7954
AT2G01640			unknown protein		Lus10002816 [exp]	13.9	0.8279

Compare expression of checked genes

Lus10031534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.