Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04210 281 / 1e-92 PUX4 plant UBX domain containing protein 4 (.1) AT4G22150 276 / 1e-89 PUX3 plant UBX domain-containing protein 3 (.1) AT4G15410 273 / 1e-87 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT3G21660 131 / 8e-34 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035318 [exp] 372 / 5e-126 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10030005 [exp] 362 / 3e-122 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10015145 [exp] 0 / 1 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225800 [exp] 350 / 6e-118 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Potri.004G004200 [exp] 307 / 1e-102 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1) Potri.011G011300 [exp] 300 / 4e-100 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.006G270300 [exp] 300 / 4e-100 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.014G157200 [exp] 293 / 6e-96 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1) Potri.011G005000 [exp] 269 / 2e-88 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08059 [flax] [poplar] SEP SEP domain CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10031535 pacid=23155856 polypeptide=Lus10031535 locus=Lus10031535.g ID=Lus10031535.BGIv1.0 annot-version=v1.0 ATGGAATCCACCGGCGAGAAGAAGATCGGTCCCACCGACGCCGACATCACCGCGCTGGTCAATTCCTTTAGCGAGATCACCTCCTCCACAAGAGAGGAAG CCGCTTTCTACTTGGAGAGCCACCAGTGGGATCTCGACACCGCCGTCTCTACCTTCCTCGACCACGACAACAACGCCGCCTCAGCTCTCCTCGAGGCCTC CGCCGCCGCTCACGCTGCTCATCCTCCTGCGGGCGAGCAGGCTCCTCCGCTGTCTCCCCCTAGGTCGCGATCGCGGTCGCTGTCTCCCGCTCCGGGGACT ACTTCTAGGTTGCCTCAGGAGCCGAGATCGAAGGAGGATAAGAAAAAGAAGAAGAAGAGCTCCAGTGGTGCCAGTGGGAGTAGGAATCGCGGCGGAATCA GGACTTTGGCTGATCTGAATCGTAATACTGCTGGCTCGGATAGCGATGATGATGAGGATGACGACGAGGAGATGCAGGAGTATTATACTGGTGGTGAGAA GAGCGGAATGCTGGTTCAAGATCCTTCGAAGAACTACGATGCAGATGCAATATTCGATCATGCTAAAAATTCTTTGGCAGTTCAAAGGCCTGAGGATATT GCTCGGGCTACTGCTCCTGCTTCAAAGAGCTTTACTGGAACAGGGAGGCTACTCTCTGGAGAGACGGTCCAGTCTACTCCTCAGCCGCCTGCATTTGTCA ACCATACCATCACTCTCTGGAGAAATGGCTTCACTGTGGACGATGGTCCTTTGAGGAGGCTAAATGATCCTGCAAATGCCGACTTCCTGGAGAGCGTGAA GAGGTCCGAGTGCCCGAGGGAGCTGTTTCCACCAGACAGGAGAACCGAAGTCCATCTCGATCTCGTGAAACGCGATGAAAACTACACAGAGCCAAAGAAG ACACCTGCAGCAGCTGCCTTCCAAGGCGTGGGCCGGACTCTAGGGGCCTCGACATCCTCCTCCTCCGCAGCTCCGGTCACAACTGCTCCACAGCCGTCCA CCGGACTTACCGTAGACTCCGCGTCCCCGAGGACATCGATCCAGTTCAGATTGGCGGACGGGACGAGAATGGTCTCCCACTTCAACTTGCACCACACCGT GGGAGATGTCCGAGCTTTCATCGTGGCTTCAAGACCTGGCGAAGTGGCCAACTTCCACCTGCAGACGATGGGGTTCCCTCCCAGACAGCTCAACGATCCA AACCAGACGATACAGGACGCTGGGATCGCGAATTCCGTCGTCATCCAGAAATTCTAG
AA sequence Show only first row Show all	>Lus10031535 pacid=23155856 polypeptide=Lus10031535 locus=Lus10031535.g ID=Lus10031535.BGIv1.0 annot-version=v1.0 MESTGEKKIGPTDADITALVNSFSEITSSTREEAAFYLESHQWDLDTAVSTFLDHDNNAASALLEASAAAHAAHPPAGEQAPPLSPPRSRSRSLSPAPGT TSRLPQEPRSKEDKKKKKKSSSGASGSRNRGGIRTLADLNRNTAGSDSDDDEDDDEEMQEYYTGGEKSGMLVQDPSKNYDADAIFDHAKNSLAVQRPEDI ARATAPASKSFTGTGRLLSGETVQSTPQPPAFVNHTITLWRNGFTVDDGPLRRLNDPANADFLESVKRSECPRELFPPDRRTEVHLDLVKRDENYTEPKK TPAAAAFQGVGRTLGASTSSSSAAPVTTAPQPSTGLTVDSASPRTSIQFRLADGTRMVSHFNLHHTVGDVRAFIVASRPGEVANFHLQTMGFPPRQLNDP NQTIQDAGIANSVVIQKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10031535 [exp]	0	1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10013850 [exp]	3.9	0.8966
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	6.5	0.9236
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	6.9	0.9183
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	9.9	0.8974
AT5G11280			unknown protein		Lus10002030 [exp]	11.4	0.9104
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	13.6	0.8847
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	13.7	0.9106
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	14.0	0.9170
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	15.0	0.8960
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	15.7	0.9091

Compare expression of checked genes

Lus10031535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.