Lus10031536 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15415 690 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2)
AT3G21650 685 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
AT3G26020 644 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
AT1G13460 640 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
AT3G26030 571 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1)
AT3G09880 567 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1)
AT5G03470 555 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1)
AT5G25510 533 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
AT3G54930 468 / 3e-161 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015144 921 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Lus10030002 746 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Lus10035321 744 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Lus10032082 670 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Lus10036926 610 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Lus10037057 607 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Lus10011381 585 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Lus10006440 581 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Lus10014417 580 / 0 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G157000 735 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Potri.002G226200 722 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Potri.010G054300 675 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Potri.008G180000 670 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Potri.017G070100 662 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Potri.008G179900 655 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Potri.010G054400 647 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Potri.016G098400 591 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Potri.006G122300 579 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Potri.006G247100 537 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF01603 B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence
>Lus10031536 pacid=23155792 polypeptide=Lus10031536 locus=Lus10031536.g ID=Lus10031536.BGIv1.0 annot-version=v1.0
ATGATCAAGCAGATATTGCAGAAGTTACCTCGCAAACCATCGAAATCGTCGAGTAATGAGAGTAGCAATGGTGACGCAGCTGGATTCAATGGTTACTCTT
CCAACAACTCGAAACCAGCTCCGGTTAGTTCGAAATTGGTTGGAAATCCGTTTCCTGCTTCGGGTGTTTACGAGCCATTGCCTAGCTTCCGTGACGTTCC
CGCCACAGAGAAGCAGAATCTTTTCATCAGAAAGCTGCAAATGTGCTGCGTGGTGTTTGATTTCACCGATCCGACGAAGCATCTCAAGGAGAAAGACGTC
AAGAGGCAGACTTTACTTGAGCTGGTTGACTATGTTACCTCCGGAACGATGAAGTTCAACGAGATTGCAATGCAGGAGATCACCAAAATGGTCTCGACGA
ATCTGTTCAGAGCGCTTCCCGCCACGAACAAGATTCTTGAAATGTACGACTTGGAAGAGGAAGAGCCGACGATGGAACCTTCCTGGCAGCATCTCCAGAT
TGTTTACGAGCTTCTCCTTCGGTTCGTGGCCTCCTCGGAGACTGATGCTAAGCTTGCTAAGCGATATATTGACCATTCGTTTGTGTTGAAGCTGCTTGAT
TTGTTCGATTCGGAGGATCAGAGGGAGAGGGAGTTTTTGAAGACGATCACGCATCGTGTCTATGGGAAATTCATGGTTCATAGGCCTTTCATAAGGAAAT
CCATCAATAATATATTCTACAGGTTCGTTTTTGAAACGGAGAGGCATAACGGGATTGCTGAGATCCTCGAGATACTGGGGAGTATTATTAACGGATTTGC
CCTGCCGTTGAAGGAAGAGCATAAGTTGTTTTTAGTTCGTGCTCTGATTCCGCTTCATAAGGTTAAATGCGTATCATTGTATCACCAGCAGCTTTCTTAC
TGCATAACTCAGTTTGTGGAGAAAGATGTCAAGCTTGCTGATACTGTGATTCGAGGGCTTTTGAGGTATTGGCCCTTGACGAATAGCTCGAAGGAAGTGA
TGTTCCTTGGTGAGTTGGAAGAAGTTTTGGAAGCTACTCAGGTGGCTGAGTTTCAGCGGTGTATGGTCCCGTTGTTCCGGCAGATTGCTCGTTGCCTCAA
CAGTTCTCATTTTCAGGTATTGCAGGCTAATTTTCATGTCTTGTTTCGCAATTATGATGTTGTCTTGCTGAAGGTTCCTCTGTCGTTTCGAGCTTTTCTC
GAGATGTTTACTGCACTTGGAAGCGGGTTTCCTTGTTTCTATCAATCGCTGTTGATGCCTGAATGCGTGGCGGAACGCGCACTGTTTCTATGGAACAACG
ATCACATACGGAACCTAATCACGCAGCAGCAGAAGATCATCCTCCCCATCATCTTCCCAGCACTAGAGAGGAACACCAGGGGACACTGGAACCAAGCTGT
TCAAAGCCTGACACTAAACGTGAGGAAGATCTTCTCTGACTCCGATGCAGAGCTCTTCGAGCAATGCTTGTCCAAGTTCCAAGAAGACGAAGCCAAGGAG
AGGGAGGCAACCGAGAGGCGCCAGCTGATCTGGCAGCAGCTGGAAGACATTGCAGCCGCCTCCACCACAGCAGCTGTGCTTGCCTCGAGGCTCGCCACCT
CGGTCGCCATTGCAACCGGACCTAGTCCACAAGCTTCAACCGGTTAG
AA sequence
>Lus10031536 pacid=23155792 polypeptide=Lus10031536 locus=Lus10031536.g ID=Lus10031536.BGIv1.0 annot-version=v1.0
MIKQILQKLPRKPSKSSSNESSNGDAAGFNGYSSNNSKPAPVSSKLVGNPFPASGVYEPLPSFRDVPATEKQNLFIRKLQMCCVVFDFTDPTKHLKEKDV
KRQTLLELVDYVTSGTMKFNEIAMQEITKMVSTNLFRALPATNKILEMYDLEEEEPTMEPSWQHLQIVYELLLRFVASSETDAKLAKRYIDHSFVLKLLD
LFDSEDQREREFLKTITHRVYGKFMVHRPFIRKSINNIFYRFVFETERHNGIAEILEILGSIINGFALPLKEEHKLFLVRALIPLHKVKCVSLYHQQLSY
CITQFVEKDVKLADTVIRGLLRYWPLTNSSKEVMFLGELEEVLEATQVAEFQRCMVPLFRQIARCLNSSHFQVLQANFHVLFRNYDVVLLKVPLSFRAFL
EMFTALGSGFPCFYQSLLMPECVAERALFLWNNDHIRNLITQQQKIILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDSDAELFEQCLSKFQEDEAKE
REATERRQLIWQQLEDIAAASTTAAVLASRLATSVAIATGPSPQASTG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G26020 Protein phosphatase 2A regulat... Lus10031536 0 1
AT4G16430 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) ... Lus10024871 6.5 0.7439
AT3G02720 Class I glutamine amidotransfe... Lus10010964 8.9 0.7614
AT3G12630 SAP5 stress associated protein 5, A... Lus10037702 25.3 0.7341
AT2G42005 Transmembrane amino acid trans... Lus10022995 25.5 0.7350
AT5G19080 RING/U-box superfamily protein... Lus10034030 27.5 0.6875
AT2G30360 PKS5, CIPK11, S... SNF1-RELATED PROTEIN KINASE 3.... Lus10009925 35.8 0.7202
AT5G13860 ELC-LIKE, ATELC... ELCH-like (.1) Lus10024108 41.3 0.7105
AT1G72430 SAUR-like auxin-responsive pro... Lus10037443 57.7 0.6575
AT1G51660 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-A... Lus10037339 63.2 0.6844
AT2G22475 GEM GL2-EXPRESSION MODULATOR, GRAM... Lus10035933 63.6 0.6748

Lus10031536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.