Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32640 769 / 0 Lycopene beta/epsilon cyclase protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015143 [exp] 583 / 0 AT2G32640 434 / 4e-152 Lycopene beta/epsilon cyclase protein (.1.2) Lus10015142 [exp] 391 / 3e-135 AT2G32640 308 / 6e-103 Lycopene beta/epsilon cyclase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156800 [exp] 852 / 0 AT2G32640 798 / 0.0 Lycopene beta/epsilon cyclase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10031537 pacid=23156004 polypeptide=Lus10031537 locus=Lus10031537.g ID=Lus10031537.BGIv1.0 annot-version=v1.0 ATGGAGAGCATATCAGTTGGCAATGAAGTCGGCGGTGCTGGTGGTGCTTACTCGTATAATGCTCTGAAGAGATTGGATCAAATTTGGTCCAGCATCTGCT CAGATGAAGCAGTGTCTCAAGAGCCTCAGAAGGTAGTCCTGACTAATCCAGGGTTATCAAGTGATTCTGATCTTGATATGAAGGCAGTTGAGAAATTTGA CGTGGTAGTTTGTGGGGGAACTCTGGGAATCTTCGTAGCTACTGCATTGAGTGCCAAAGGTCTTAGAGTGGCCATTGTGGAGAAGAATGTTCTACAAGGG AGACAACAAGAATGGAACATCTCGAGGAAGGAGCTGTTGGAGCTTGTGGAAGTCGGAGTTTTGGCCGATGAGGATATCGAACAAGCTACATCGTCGAAGT TTAATCCTAATAGATGTGGATTCGAGGATAAGGGTGAAATATGGGTTGAAGACATTCTTAACCTTGGTGTTTCACCGGCGAAACTGATAGACATAGTGAA GAACCGGTTTATCGCACTCGGAGGAGTCATCTTCGAAGGTTACACGCTTTCCAGCATCTGTGTCTATGAAGATATTGCGGCTTTGCAGCTTGCAGAGGGT AAAATCTTATCGTGCCGACTCGTGCTCGATGCAATGGGGAACTTTTCTCCTGTAGTTAGGCAGATTAGAAGTGGAAGGAAACCTGACGGTGTTTGTCTCG TAGTCGGAACCTGTGCTCACGGTTTCGGGGAAAATTCGACAAGTGATGTTATTTACAGCAGCTCATCGTTTAAGAAGATCGGAGATTCAGAAGTACAGCT ATTCTGGGAGGCGTTTCCTGCAGGTTCTGGTCCGTTGGACCGTACTACTTACATGTTCACCTATGTTCGGCCGCAACCCGGATCGCCAAAACTGGAGGAA CTGCTCGAGAGCTACTGGGATTTGATGCCGAAATATCAGGGGATCTCTCTTGAAAGTCTTGAAATTCAACGAGTCATATATGGAATCTTTCCTACATATC GAGACAGTCCGTTACCAGCCGCCTTTAACCGCATCTTACAGTTTGGAGATGCTAGTGGCATACAGTCACCAGTTTCGTTTGGTGGTTTCGGAAGCTTAAC GAGACACCTAGGGAGGCTTTCATCTGGTATATATGAAGCAATCAATGGAGATTTCCTAGATGCAGAAAGCTTGTCCCTTTTAAACCCTTACATGCCGAAC TTGAGCGCTTCGTGGCTGTTCCAAAGAGCAATGTCGGCCAAGCAAGACTCGAATGCTTATCCGGAATTCGTGAATGACCTTCTTCATGTCAATTTCCAGA GTATGCAGAAGCTGGGAGATCCAGTCCTGAGACCGTTTCTTCAGGATGTTATACAGTTTGGTGCTCTTACTAAGACATTAGGACTTGTTATGTTGAACAA ACCCCAAATCATCCCATCAATATTCAAACAGGTTGGGATTCCGGTGCTTGTGGACTGGTCGGGCCATTTCTTCATGCTAGGTCTTTACACTTTCCTTTCT ACATTTGCTGATCCTGCTATTAGGCAATTGTCGAGCTCTTCTCCATCCAAGACCAAGTATGCATGGAACCGTCGTCTCGATGCTTGGAAATATGGTTCTG GTTTAGACTACAAGCTTTGA
AA sequence Show only first row Show all	>Lus10031537 pacid=23156004 polypeptide=Lus10031537 locus=Lus10031537.g ID=Lus10031537.BGIv1.0 annot-version=v1.0 MESISVGNEVGGAGGAYSYNALKRLDQIWSSICSDEAVSQEPQKVVLTNPGLSSDSDLDMKAVEKFDVVVCGGTLGIFVATALSAKGLRVAIVEKNVLQG RQQEWNISRKELLELVEVGVLADEDIEQATSSKFNPNRCGFEDKGEIWVEDILNLGVSPAKLIDIVKNRFIALGGVIFEGYTLSSICVYEDIAALQLAEG KILSCRLVLDAMGNFSPVVRQIRSGRKPDGVCLVVGTCAHGFGENSTSDVIYSSSSFKKIGDSEVQLFWEAFPAGSGPLDRTTYMFTYVRPQPGSPKLEE LLESYWDLMPKYQGISLESLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSSGIYEAINGDFLDAESLSLLNPYMPN LSASWLFQRAMSAKQDSNAYPEFVNDLLHVNFQSMQKLGDPVLRPFLQDVIQFGALTKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGLYTFLS TFADPAIRQLSSSSPSKTKYAWNRRLDAWKYGSGLDYKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	0	1
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	1.0	0.9476
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	2.2	0.9340
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	3.7	0.9475
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10016221 [exp]	4.1	0.9093
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	4.9	0.9474
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	5.3	0.9417
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	6.9	0.9313
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	8.5	0.9252
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10018305 [exp]	9.0	0.8642
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	10.7	0.9029

Compare expression of checked genes

Lus10031537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.