Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15420 701 / 0 Ubiquitin fusion degradation UFD1 family protein (.1) AT2G21270 121 / 1e-30 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 119 / 6e-30 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G29070 119 / 7e-30 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT1G09920 65 / 5e-12 TRAF-type zinc finger-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015140 [exp] 992 / 0 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10018057 [exp] 112 / 6e-27 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 107 / 2e-25 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 103 / 5e-24 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 74 / 3e-14 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 72 / 3e-13 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10042917 [exp] 62 / 1e-10 AT1G09920 257 / 4e-88 TRAF-type zinc finger-related (.1) Lus10028213 [exp] 59 / 1e-09 AT1G09920 256 / 2e-87 TRAF-type zinc finger-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156300 [exp] 797 / 0 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Potri.004G163200 [exp] 115 / 1e-28 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 114 / 4e-28 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 112 / 2e-27 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.002G109800 [exp] 64 / 1e-11 AT1G09920 273 / 1e-94 TRAF-type zinc finger-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10031538 pacid=23156001 polypeptide=Lus10031538 locus=Lus10031538.g ID=Lus10031538.BGIv1.0 annot-version=v1.0 ATGCAAGAGAATTTGATTGTTGGGAGAGGGATTGTGTTCTCTCGTGTGTTGGAAGCTATAGGTTTCCAAGGAAGTGGGGATAGGATCAAATTGCCTCCTT CGTGTTTCACTGAGTTGTCCGATCAAGGTGCGTTTGATAAGGGTCCGTTGTACTTCCAGTTATCCGTAGTTGGTGGTTCGGAGTCAACGAATTCGGGTGT TCTCGAGTTTACAGCGGAGGAAGGGAAGGTTGAGCTTCCTCGTCATGTATGGAGCAACCTGTTTTCTACTGAGACGAATATGGATGCTCCCATGGTCGAG GTTCGATATGTCTGGTTACCTAAAGGAACATACGCGAAGCTCCAGCCTAATGTGGTGGGGTTTTCGGACATTCCTAATCATAAGGCGGTGCTCGAAACGA GCCTGAGGCAGCACGCTACTCTCTCGGAAGGTGACGTGATTACTGTGAATCATGGGGTGTTGAGCTACAAGCTGAGAGTGCTCGAGTTGAAGCCTTCTTC GAGCGTTTCAGTTCTGGAGACGGATATTGAGGTTGATATCGTTGGTTCAGATTCGCCTGTGGATGAAGGGTCGGATCAGCATGTGTTGAAGGCACTAACG TTTGGAGTTTCGGAATCTGGAATGGTTGAAGAGGGGAAATACAAGTATTATAAGTTCTCGGTTGATGATCTTATTTGGGAAACGATTACATCCGGGGATG TAATGATTGAGGTTAAGATTGAGGTTGAGACTGATGATGGTGATACCGATCTTTACATTTCCAAGCATCCTCTCCTTTTCCCTAACAGGCACCAGCACGA ATGGTCTTCACACGACATGGGTTCGAAAGTGCTGTTCCTGACTTCCAAAGACAAGAACTTGGGAGTTGGAACTTACAGCATTGGTGTCTACGGTTTCAAA GGAACGGCCAAGTACAAGGTTTCGGTCAGTGCGCAGGATAATAACACTTCGAAAGCAGGAAAGCAAGCTGGATCCACATCATCGTCATCATCGATGGATG TAGATGCTGTCGAGTGCAGAAATTGCAAGCATTTCATACCTAGTAGGAGCATATCGCTGCACGAAGCCTATTGCGCCAGACACAATGTAGCTTGTAAGCA TCCTAGCTGTGGAGTTGTTCTTAGAGTTGGCGAGGTCCAGAACCATGTTCATTGCGACAAGTGCGGGCTGGCTTTCCACAAGGACGAAATCAATAAGCAC GCCAAGGTCTTCCACGAGCCGGTTCAGTGTCCCTGCGGCGTAGTTCTCGAGAGGGAACCAATGGTCCAGCATCAGGCTTCGGTATGTCCGCTGCGGCTGA TCACGTGCAGGTTCTGCGGGGACATGGTTCGAGCTGGGACTTCGGCTATGGACACGAGAGACAGAATGCGAGGGCTGACGGAGCACGAGAGCCTCTGCGG GTCGAGAACTGCCCCGTGTGATTCGTGTGGAAGGTCTGTGATGTTGAAGGAGATGGATATTCATCAGGTTGCTGTTCACCAGAAGGGTTGA
AA sequence Show only first row Show all	>Lus10031538 pacid=23156001 polypeptide=Lus10031538 locus=Lus10031538.g ID=Lus10031538.BGIv1.0 annot-version=v1.0 MQENLIVGRGIVFSRVLEAIGFQGSGDRIKLPPSCFTELSDQGAFDKGPLYFQLSVVGGSESTNSGVLEFTAEEGKVELPRHVWSNLFSTETNMDAPMVE VRYVWLPKGTYAKLQPNVVGFSDIPNHKAVLETSLRQHATLSEGDVITVNHGVLSYKLRVLELKPSSSVSVLETDIEVDIVGSDSPVDEGSDQHVLKALT FGVSESGMVEEGKYKYYKFSVDDLIWETITSGDVMIEVKIEVETDDGDTDLYISKHPLLFPNRHQHEWSSHDMGSKVLFLTSKDKNLGVGTYSIGVYGFK GTAKYKVSVSAQDNNTSKAGKQAGSTSSSSSMDVDAVECRNCKHFIPSRSISLHEAYCARHNVACKHPSCGVVLRVGEVQNHVHCDKCGLAFHKDEINKH AKVFHEPVQCPCGVVLEREPMVQHQASVCPLRLITCRFCGDMVRAGTSAMDTRDRMRGLTEHESLCGSRTAPCDSCGRSVMLKEMDIHQVAVHQKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	0	1
AT3G09110			Protein of unknown function (D...		Lus10003166 [exp]	1.0	0.8984
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	18.0	0.8784
AT3G52710			unknown protein		Lus10021354 [exp]	19.5	0.8939
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	20.2	0.8772
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10000324 [exp]	22.6	0.8594
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	23.9	0.8657
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10002855 [exp]	29.1	0.8414
AT1G03070			Bax inhibitor-1 family protein...		Lus10022085 [exp]	37.9	0.8772
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	42.6	0.8833
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	56.9	0.8428

Compare expression of checked genes

Lus10031538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.